Noncoding annotations for WGS?
When looking at SNV and CNV in intronic regions, what annotations should be taken into account?
Here is what I can think of so far:
- Histone regions
- Regulatory sites (splicing)
- Transcription factors
- eQTL catalogs (GTEx, Expression Atlas)
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Evolutionary conservation (phastCons scores) might contribute to identify conserved (and therefore potentially meaningful) genomic sites.
Thank you. I'm having a look now. What kinds of questions would this help you answer about a gene or variant?