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How to get a partition file for phylogenetic trees?
phylogenetic python analysis partition
14 months ago by YOUSEUFS ▴ 30
0
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0
replies
302
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How to get Pfam domain ID's for a proteome?
pfam acid protein amino interpro domains
16 months ago by YOUSEUFS ▴ 30
0
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0
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621
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Comment: Comment: Collapse multifasta file by specific chromosome names
18 months ago by YOUSEUFS ▴ 30
0
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1
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621
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Comment: Comment: Collapse multifasta file by specific chromosome names
18 months ago by YOUSEUFS ▴ 30
2
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4
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621
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Collapse multifasta file by specific chromosome names
fasta
18 months ago by YOUSEUFS ▴ 30
1
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2
replies
562
views
Can you do a sequence alignment with an uneven number of genes? (For phylogenetics)
alignment phylogenetics sequence
updated 18 months ago by 142k • written 18 months ago by ▴ 30
0
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1
reply
420
views
How to retrieve all genes of interest from GenBank?
ncbi genbank phylogenetics mitochondria
updated 18 months ago by 100k • written 18 months ago by ▴ 30
2
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4
replies
608
views
How to extract and concatenate fasta lines that match substring?
fasta python
updated 19 months ago by 13k • written 19 months ago by ▴ 30
0
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1
reply
608
views
Comment: Comment: How to extract and concatenate fasta lines that match substring?
19 months ago by YOUSEUFS ▴ 30
0
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0
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956
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Comment: Comment: How to batch download multiple mitochondrial FASTA & GFF files?
20 months ago by YOUSEUFS ▴ 30
0
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1
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956
views
Comment: Comment: How to batch download multiple mitochondrial FASTA & GFF files?
20 months ago by YOUSEUFS ▴ 30
0
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1
reply
956
views
Comment: Comment: How to batch download multiple mitochondrial FASTA & GFF files?
20 months ago by YOUSEUFS ▴ 30
0
votes
1
reply
956
views
Comment: Comment: How to batch download multiple mitochondrial FASTA & GFF files?
20 months ago by YOUSEUFS ▴ 30
2
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8
replies
956
views
How to batch download multiple mitochondrial FASTA & GFF files?
ncbi genomics mitochondria genomes entrez
20 months ago by YOUSEUFS ▴ 30
1
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1
reply
512
views
Where are the associated annotation (GFF) files for mitochondrial genomes on NCBI?
phylogenomics mitochondrial genomics NCBI
20 months ago by YOUSEUFS ▴ 30
1
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0
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512
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Answer: Answer: Where are the associated annotation (GFF) files for mitochondrial genomes on NCB
20 months ago by YOUSEUFS ▴ 30
1
vote
1
reply
530
views
Extract reads from specific taxa in blob tools?
genomics metagenomics blobtools
updated 11 months ago by 43k • written 22 months ago by ▴ 30
1
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0
replies
924
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topGO enrichment: Should the "Gene universe" also contain genes with no GO term?
enrichment RNA-Seq go topGO
3.4 years ago by YOUSEUFS ▴ 30
0
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0
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2.2k
views
Comment: C: GFF file multiple features for 1 gene region, how to collapse into 1?
5.6 years ago by YOUSEUFS ▴ 30
1
vote
3
replies
2.2k
views
GFF file multiple features for 1 gene region, how to collapse into 1?
RNA-Seq GFF BEDTOOLS
updated 5.6 years ago by ★ 3.2k • written 5.6 years ago by ▴ 30
8
votes
4
replies
4.8k
views
Mapping contigs & scaffolds to ref genome?
mapping Assembly bowtie2
updated 5.8 years ago by 35k • written 6.6 years ago by ▴ 30
0
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1
reply
2.2k
views
Comment: C: Aligning Draft to Reference genomes, rearranging contigs?
6.6 years ago by YOUSEUFS ▴ 30
0
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3
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2.2k
views
Aligning Draft to Reference genomes, rearranging contigs?
mummer Assembly alignment
6.6 years ago by YOUSEUFS ▴ 30
0
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1
reply
1.5k
views
Comment: A: .nt assemblage file, can I convert to FASTA?
updated 6.6 years ago by 161k • written 6.6 years ago by ▴ 30
0
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3
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1.5k
views
.nt assemblage file, can I convert to FASTA?
fasta file usage mapping bowtie
6.6 years ago by YOUSEUFS ▴ 30
0
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1
reply
1.3k
views
htseq-count results in missing genes
htseq-count RNA-Seq
6.7 years ago by YOUSEUFS ▴ 30
0
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0
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2.4k
views
Comment: C: Visualising indexed and sorted bam files
6.8 years ago by YOUSEUFS ▴ 30
6
votes
5
replies
2.4k
views
Visualising indexed and sorted bam files
rna-seq
updated 6.8 years ago by ★ 2.9k • written 6.8 years ago by ▴ 30
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