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315
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The difference blastn output when using subject and db options
genome blastn mite annotation tracker
updated 5 months ago by 142k • written 5 months ago by ▴ 40
1
vote
2
replies
426
views
extract first and last n bp from fasta file from multiple fasta file in R
comparative-genomics
updated 7 months ago by 43k • written 7 months ago by ▴ 40
3
votes
3
replies
523
views
Covert multiple short sequence into list of IUPAC motif
sequence
updated 11 months ago by 142k • written 11 months ago by ▴ 40
0
votes
0
replies
324
views
comparing the intron/ intron location with the reference transcript in the orthologous transcripts
comparative-genomics transcripts
updated 7 months ago by 43k • written 17 months ago by ▴ 40
0
votes
0
replies
356
views
How can I identity Branch point sequence from Intron?
DNA-seq splicing RNA-seq
updated 7 months ago by 43k • written 2.3 years ago by ▴ 40
1
vote
1
reply
511
views
Validating splice site using protein sequence
RNA-seq transcript assembly DNA-seq annotation
updated 2.3 years ago by 3.9k • written 2.3 years ago by ▴ 40
0
votes
0
replies
369
views
Where I can find splice-leader (SL) sequence set ?
SL-leader trans-splicing
2.7 years ago by praasu ▴ 40
0
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1
reply
1.0k
views
Comment: Comment: How to extract the first and last 2 nt from multiple sequences in a FASTA file?
2.8 years ago by praasu ▴ 40
3
votes
3
replies
1.0k
views
How to extract the first and last 2 nt from multiple sequences in a FASTA file?
perl awk fasta genome sequence
updated 7 months ago by 43k • written 2.8 years ago by ▴ 40
1
vote
0
replies
798
views
braker2 output: gff file is missing and species folder is empty
prothint braker2 genome braker annotation
updated 3.1 years ago by 11k • written 3.1 years ago by ▴ 40
0
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1
reply
1.8k
views
Comment: C: how to extract intron coordinates (in bed) from bam
3.8 years ago by praasu ▴ 40
0
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1
reply
1.8k
views
Comment: C: how to extract intron coordinates (in bed) from bam
3.9 years ago by praasu ▴ 40
0
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1
reply
1.8k
views
Comment: C: how to extract intron coordinates (in bed) from bam
3.9 years ago by praasu ▴ 40
0
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0
replies
8.1k
views
Comment: C: ChIP-Seq TSS Line Plot
4.0 years ago by praasu ▴ 40
0
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0
replies
2.7k
views
Comment: C: convert bedgraph to bed
4.2 years ago by praasu ▴ 40
0
votes
1
reply
2.7k
views
Comment: C: convert bedgraph to bed
4.2 years ago by praasu ▴ 40
0
votes
4
replies
2.7k
views
convert bedgraph to bed
RNA-Seq ChIP-Seq R
4.2 years ago by praasu ▴ 40
4
votes
7
replies
1.8k
views
how to extract intron coordinates (in bed) from bam
RNA-Seq
updated 4.3 years ago by 104k • written 4.3 years ago by ▴ 40
0
votes
0
replies
1.6k
views
Comment: C: Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
4.3 years ago by praasu ▴ 40
0
votes
2
replies
1.6k
views
Comment: C: Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
4.3 years ago by praasu ▴ 40
2
votes
5
replies
1.6k
views
Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
RNA-Seq BLAT alignment
4.3 years ago by praasu ▴ 40
0
votes
0
replies
1.5k
views
Comment: C: Converting gff hints to genbank format for augustus training
4.3 years ago by praasu ▴ 40
0
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0
replies
1.4k
views
Comment: C: gene prediction without GT-AG splice site bias
4.3 years ago by praasu ▴ 40
0
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1
reply
5.0k
views
Comment: C: Augustus training and artemis
updated 4.3 years ago by 43k • written 4.8 years ago by ▴ 40
0
votes
2
replies
1.5k
views
Converting gff hints to genbank format for augustus training
augustus dna-seq genome annotation
updated 4.4 years ago by ▴ 10 • written 4.8 years ago by ▴ 40
0
votes
0
replies
858
views
Mapsplice Error: convert sam file to junctions failed
mapsplice RNA-Seq alignment bowtie
4.6 years ago by praasu ▴ 40
2
votes
4
replies
849
views
how split multiple fasta file into multiple file
R sequence RNA-Seq Assembly genome
updated 4.6 years ago by 82k • written 4.6 years ago by ▴ 40
2
votes
3
replies
1.4k
views
gene prediction without GT-AG splice site bias
Assembly blat genome annotation rna-seq
updated 4.8 years ago by ★ 1.9k • written 4.8 years ago by ▴ 40
2
votes
3
replies
1.0k
views
Mapping Illumina reads against one single gene Vs whole genome
RNA-Seq ChIP-Seq iclip rna-seq
updated 5.0 years ago by 35k • written 5.0 years ago by ▴ 40
0
votes
0
replies
1.0k
views
Comment: C: Mapping Illumina reads against one single gene Vs whole genome
5.0 years ago by praasu ▴ 40
1
vote
0
replies
1.1k
views
Annotation of genome with non-cannonical splice site
RNA-Seq exonerate genome annotation splice site
5.1 years ago by praasu ▴ 40
0
votes
0
replies
2.1k
views
Comment: C: help regarding abyss assembly
5.4 years ago by praasu ▴ 40
0
votes
1
reply
2.1k
views
Comment: C: help regarding abyss assembly
5.4 years ago by praasu ▴ 40
0
votes
3
replies
2.1k
views
help regarding abyss assembly
next-gen Assembly genome SNP sequencing
5.4 years ago by praasu ▴ 40
1
vote
1
reply
1.4k
views
extracting first exon and corresponding transcript coordinates for human
RNA-Seq R gene genome next-gen
5.6 years ago by praasu ▴ 40
0
votes
1
reply
4.9k
views
Comment: C: Extracting Intron-Exon Reads from bam files
6.3 years ago by praasu ▴ 40
0
votes
1
reply
4.9k
views
Comment: C: Extracting Intron-Exon Reads from bam files
6.3 years ago by praasu ▴ 40
0
votes
1
reply
4.9k
views
Comment: C: Extracting Intron-Exon Reads from bam files
6.3 years ago by praasu ▴ 40
0
votes
1
reply
4.9k
views
Comment: C: Extracting Intron-Exon Reads from bam files
6.4 years ago by praasu ▴ 40
0
votes
1
reply
4.9k
views
Comment: C: Extracting Intron-Exon Reads from bam files
6.4 years ago by praasu ▴ 40
5
votes
11
replies
4.9k
views
Extracting Intron-Exon Reads from bam files
RNA-Seq
updated 6.4 years ago by 161k • written 6.4 years ago by ▴ 40
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