comparing the intron/ intron location with the reference transcript in the orthologous transcripts
Hi Guys.
I have 7 (1 reference and 6 I have annotated) genome assembly and annotation. I have identified the orthologous transcripts between the reference and each species. Now, I want to compare the intron/ intron location with the reference transcript in the orthologous transcripts. Let me know if anybody has any suggestions.
Thank you very much in advance.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to Perform Differential Expression Analysis Between Two Species' Transcriptomes?
written by PALA •
-
Transcript Assembly for Multiple Species Using StringTie and Orthogroup Discovery using OrthoFinder
written by dtnondorf •
-
Is reciprocal best hit method applicable for non-coding RNA to find orthologs?
written by jirathnuan •
-
How to analysis genomes with orthologs?
written by 沛煒 •
-
How can I identity Branch point sequence from Intron?
written by praasu •
-
Validating splice site using protein sequence
written by praasu •
-
How can I know if a new transcript was assembled in a specific or both conditions in merge GTF file?
written by tawares07 •
-
gene feature extraction from ensembl ID/gene name
written by rajesh
-
How To Compare 2 Differential Expressed Transcripts From 2 Different De Novo Assembly?
written by nbvasani
-
Comparing Cdna Sequence From Different Species
written by jackuser1979
