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Deconvolution: bulk and cell signature data from different platforms or technologies
CIBERSORT RNASeq Microarray deconvolution signature
3 months ago by zhang.jianhai ▴ 30
1
vote
2
replies
874
views
Single-cell RNA Seq on whole organ or whole tissue with known cell origins
known-cell-origin whole-organ single-cell-RNA-Seq whole-tissue
2.7 years ago by zhang.jianhai ▴ 30
0
votes
1
reply
809
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Filter RNA-seq matrix
rna-seq cv
updated 4.3 years ago by 20 • written 4.3 years ago by ▴ 30
5
votes
4
replies
3.3k
views
RPKM/CPM/FPKM to log2 units
RPKM log2
updated 4.4 years ago by ★ 6.0k • written 4.4 years ago by ▴ 30
0
votes
0
replies
585
views
Gene network module identification methods
gene network module
4.4 years ago by zhang.jianhai ▴ 30
0
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10
replies
4.6k
views
functional enichment with custom gene annotation
enrichment
updated 4.4 years ago by ▴ 140 • written 4.5 years ago by ▴ 30
1
vote
4
replies
879
views
Well studied gene networks/pathways in rice
pathway rice
4.5 years ago by zhang.jianhai ▴ 30
0
votes
1
reply
788
views
Enrichment of pathways, reactome, known networks in rice
pathway reactome known networks rice
4.5 years ago by zhang.jianhai ▴ 30
2
votes
6
replies
1.9k
views
Network construction methods using Bayesian Network or mutual information
gene network Bayesian network mutual information
5.2 years ago by zhang.jianhai ▴ 30
4
votes
2
replies
1.3k
views
Partial correlation matrix and gene cluster
partial correlation matrix gene network
updated 5.2 years ago by 27k • written 5.2 years ago by ▴ 30
1
vote
4
replies
2.4k
views
How to plot two networks with overlapping nodes?
network
5.9 years ago by zhang.jianhai ▴ 30
8
votes
14
replies
6.7k
views
7 follow
GO enrichment analysis with human ENSEMBL ids
R RNA-Seq ensembl GO enrichment edgeR
updated 6.9 years ago by • 0 • written 7.0 years ago by ▴ 30
0
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1
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2.5k
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DiffCorr: cannot run Bellman-Ford algorithm, Negative loop detected while calculating shortest paths
Pacakge DiffCorr graph clustering
updated 6.9 years ago by 27k • written 6.9 years ago by ▴ 30
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