Gene network module identification methods
Dear community,
I am comparing gene network module identification methods. I have considered WGCNA, petal, Clust, GeneNet, Cross-Clustering, minet, and want as more as possible. What other methods do you recommend?
The methods I am interested in would have 1) R implementation 2) generate gene connection information, not just detect gene modules.
Regards
• 814 views
•
link
written
by
zhang.jianhai •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Can PC1 (eigengenes) from different gene sets be compared in WGCNA/hdWGCNA?
written by Shriyansh •
-
Nearest neighbors from a determinate gene in the module
written by cardon.chc •
-
Regarding finding hub genes using WGCNA
written by seta
-
Identification of modules of genes that vary over pseudotime (scRNA-seq pseudotime analysis)
written by Lucy •
-
[WGCNA]: How to extract genes that are connected to a hub gene of interest?
written by obuhovadarina •
-
Filter RNA-seq matrix
written by zhang.jianhai •
-
Partial correlation matrix and gene cluster
written by zhang.jianhai •
-
Module merging WGCNA
written by Bioinformatics_NewComer
-
How to find the hub genes in the gene co-expression network constructed by WGCNA
written by wangdp123
-
After WGCNA analysis: Gene regulatory Network ?
written by Gabin •
