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1
vote
1
reply
300
views
getting error when transfer labels for my scRNAseq data using FindTransferAnchors
scRNAseq
9 weeks ago by Sara ▴ 240
1
vote
1
reply
254
views
biological replicate in STAR command
RNAseq
updated 10 weeks ago by 14k • written 10 weeks ago by ▴ 240
1
vote
1
reply
232
views
filtering gene sets when performing scRNAseq data analysis
scRNA-seq
updated 3 months ago by 43k • written 3 months ago by ▴ 240
2
votes
5
replies
551
views
batch effect correction in 10x genomics single cell sequencing
scRNA-seq
updated 3 months ago by • 0 • written 3 months ago by ▴ 240
2
votes
1
reply
638
views
Condition specific marker detection and problem with the distribution of cells from different samples
scRNAseq
4 months ago by Sara ▴ 240
0
votes
0
replies
487
views
Comment: Comment: labelling the clusters from the CD4 T cell scRNAseq data
5 months ago by Sara ▴ 240
0
votes
3
replies
487
views
labelling the clusters from the CD4 T cell scRNAseq data
scRNAseq
5 months ago by Sara ▴ 240
0
votes
2
replies
477
views
how to fix low RNA input in bulk RNAseq data analysis?
RNAseq
updated 5 months ago by 82k • written 5 months ago by ▴ 240
4
votes
2
replies
1.6k
views
keep getting error while trying to convert Seurat object into a H5ad file
scRNA-seq Seurat
updated 3 months ago by 43k • written 5 months ago by ▴ 240
0
votes
1
reply
662
views
convert matrix files from 10X (single cell) to h5 file
scRNA-seq
updated 6 months ago by ★ 2.4k • written 6 months ago by ▴ 240
2
votes
1
reply
380
views
zero counts for all genes in RNAseq data of Ferret
RNA-seq DGE
updated 6 months ago by 43k • written 6 months ago by ▴ 240
0
votes
1
reply
479
views
Comment: Comment: Correct for different number of cells and individuals in single cell data analys
6 months ago by Sara ▴ 240
0
votes
3
replies
479
views
Correct for different number of cells and individuals in single cell data analysis
scRNA-seq
updated 6 months ago by 43k • written 6 months ago by ▴ 240
0
votes
1
reply
758
views
Add samples IDs to Seurat object when integrating different samples to do differential expression analysis
scRNA-seq Seurat
updated 7 months ago by 43k • written 7 months ago by ▴ 240
0
votes
2
replies
1.1k
views
differential gene expression analysis comparing different conditions using scRNAseq
scRNAseq
updated 7 months ago by ▴ 100 • written 7 months ago by ▴ 240
5
votes
9
replies
1.2k
views
losing many genes while doing DGE on the RNAseq data due to read count threshold
DGE RNAseq
updated 9 months ago by 19k • written 9 months ago by ▴ 240
0
votes
1
reply
1.2k
views
Comment: Comment: losing many genes while doing DGE on the RNAseq data due to read count threshold
9 months ago by Sara ▴ 240
0
votes
1
reply
1.2k
views
Comment: Comment: loosing many genes while doing DGE on the RNAseq data due to read count threshol
9 months ago by Sara ▴ 240
0
votes
1
reply
507
views
including incomplete data set in the PCA & gene expression analysis
RNA-seq
updated 10 months ago by 4.2k • written 10 months ago by ▴ 240
0
votes
1
reply
520
views
demultiplex bcl files from 10X genomics and generate fastq file for each sample separately
scRNAseq
updated 11 months ago by 142k • written 11 months ago by ▴ 240
2
votes
3
replies
1.3k
views
counts matrix should be numeric, currently it has mode: character when using a csv file in R for DESeq2
DESeq2
updated 11 months ago by 43k • written 11 months ago by ▴ 240
1
vote
1
reply
501
views
making metadata file for differential gene expression analysis
RNAseq
updated 11 months ago by ★ 2.0k • written 11 months ago by ▴ 240
0
votes
0
replies
666
views
Comment: Comment: modelling time series data from different individuals
11 months ago by Sara ▴ 240
0
votes
2
replies
666
views
modelling time series data from different individuals
modeling
11 months ago by Sara ▴ 240
0
votes
1
reply
762
views
issue with merging single cell data files
scRNAseq
updated 14 months ago by ▴ 150 • written 14 months ago by ▴ 240
0
votes
1
reply
685
views
Comment: Comment: how to find the Allele Number of specific variant from gnomAD
21 months ago by Sara ▴ 240
1
vote
3
replies
685
views
how to find the Allele Number of specific variant from gnomAD
gnomAD
updated 21 months ago by 161k • written 21 months ago by ▴ 240
0
votes
0
replies
381
views
no read counts per allele while using gatk ASEReadCounter
GATK
23 months ago by Sara ▴ 240
0
votes
0
replies
932
views
Comment: Comment: Unable to access error while running docker container for GATK
23 months ago by Sara ▴ 240
0
votes
1
reply
932
views
Comment: Comment: Unable to access error while running docker container for GATK
23 months ago by Sara ▴ 240
2
votes
4
replies
932
views
Unable to access error while running docker container for GATK
gatk docker
23 months ago by Sara ▴ 240
0
votes
3
replies
1.0k
views
Getting fastq files as the output of bowtie2
bowtie2
updated 24 months ago by 21k • written 24 months ago by ▴ 240
3
votes
7
replies
2.4k
views
downloading human rRNA.fasta
rRNA
updated 4 months ago by • 0 • written 24 months ago by ▴ 240
0
votes
0
replies
392
views
make sashimi plot on the IGV using cram file
sashimi plot
24 months ago by Sara ▴ 240
4
votes
3
replies
2.1k
views
determine sex ratio from the bam file
bam
updated 2.0 years ago by ▴ 30 • written 2.0 years ago by ▴ 240
4
votes
2
replies
573
views
Detection of single nucleotide insertion within a tandem repeat region of variable length (VNTR) using WES data
WES
updated 2.0 years ago by 82k • written 2.0 years ago by ▴ 240
0
votes
2
replies
507
views
download sequencing data from public domain
fastq
updated 2.0 years ago by ▴ 230 • written 2.0 years ago by ▴ 240
0
votes
0
replies
1.3k
views
Comment: Comment: weird alignment results for RNAseq data
2.1 years ago by Sara ▴ 240
0
votes
1
reply
1.3k
views
Comment: Comment: weird alignment results for RNAseq data
2.1 years ago by Sara ▴ 240
0
votes
2
replies
1.3k
views
Comment: Comment: weird alignment results for RNAseq data
2.1 years ago by Sara ▴ 240
0
votes
1
reply
1.3k
views
Comment: Comment: weird alignment results for RNAseq data
2.1 years ago by Sara ▴ 240
1
vote
12
replies
1.3k
views
weird alignment results for RNAseq data
hisat2 star
updated 2.1 years ago by 21k • written 2.1 years ago by ▴ 240
2
votes
2
replies
845
views
huge difference when comparing 2 vcf files from the same sample
VCF
updated 2.1 years ago by 22k • written 2.1 years ago by ▴ 240
2
votes
2
replies
614
views
monoallelic expression analysis
expression monoallelic analysis
updated 2.1 years ago by ★ 3.0k • written 2.1 years ago by ▴ 240
1
vote
1
reply
394
views
filtering out 0/0 calls from VCF file
VCF
updated 2.1 years ago by 161k • written 2.1 years ago by ▴ 240
4
votes
4
replies
763
views
VCF file comparison and plotting them
vcf
updated 2.1 years ago by 161k • written 2.1 years ago by ▴ 240
0
votes
2
replies
1.5k
views
create index for genome instead of transcriptome using Salmon
salmon
updated 2.3 years ago by 14k • written 2.3 years ago by ▴ 240
1
vote
1
reply
841
views
weird error while running rmats on fastq files using hg38 genome
rmats
updated 2.3 years ago by ★ 1.8k • written 2.3 years ago by ▴ 240
3
votes
3
replies
1.2k
views
novel AS events detection from RNA seq
Splicing Alternative
updated 2.3 years ago by ▴ 10 • written 2.4 years ago by ▴ 240
3
votes
4
replies
896
views
correct fastq files for the expression analysis
cram
updated 2.4 years ago by 21k • written 2.4 years ago by ▴ 240
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