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231
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Normalization strategies for comparing mapped reads across samples in RNA-seq
normalization rnaseq
updated 5 weeks ago by 43k • written 5 weeks ago by ▴ 640
1
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1
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213
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Seeking for edgeR TMM Normalization calcul example
tmm edgeR deseq2
updated 6 weeks ago by ★ 16k • written 6 weeks ago by ▴ 640
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712
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Comment: Comment: Filter out doublet and Clustering
8 weeks ago by Picasa ▴ 640
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1
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394
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Comment: Comment: GO enrichment plot with dotplot strange axis
3 months ago by Picasa ▴ 640
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3
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394
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GO enrichment plot with dotplot strange axis
enrichment go plot
updated 12 weeks ago by ★ 2.4k • written 3 months ago by ▴ 640
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0
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44k
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Comment: Comment: ClusterProfiler : What is GeneRatio and BgRatio?
3 months ago by Picasa ▴ 640
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1
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453
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Seurat: How to get all genes name of a cell ?
seurat
updated 11 months ago by ★ 1.8k • written 11 months ago by ▴ 640
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10k
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Comment: Comment: DESeq2 modelling and Wald's test
11 months ago by Picasa ▴ 640
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1
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537
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DESeq2 : parameter of Negative Binomial model in a context of gene expression
rnaseq DESeq2 NB
11 months ago by Picasa ▴ 640
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11
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6.3k
views
7 follow
PCA on VCF
pca vcf
updated 21 months ago by 22k • written 8.1 years ago by ▴ 640
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6
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4.3k
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Merging vcf files ?
vcf
updated 23 months ago by • 0 • written 7.9 years ago by ▴ 640
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1
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851
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Comment: Comment: Alignment of genomes and get statistics about alignment
2.6 years ago by Picasa ▴ 640
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3
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851
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Alignment of genomes and get statistics about alignment
genome
updated 2.6 years ago by ▴ 510 • written 2.6 years ago by ▴ 640
2
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2
replies
756
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Primers and multimapping ?
primer3
updated 2.6 years ago by 82k • written 2.6 years ago by ▴ 640
2
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1
reply
795
views
R package for structural variation representation ?
structural variation mummer
updated 2.7 years ago by 3.9k • written 2.7 years ago by ▴ 640
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0
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4.9k
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Comment: Comment: repeatmasker species setting
2.7 years ago by Picasa ▴ 640
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1
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6.8k
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Comment: Comment: gene set filter/selection for training ab initio annotation tools
2.8 years ago by Picasa ▴ 640
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1
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6.8k
views
Comment: Comment: gene set filter/selection for training ab initio annotation tools
2.8 years ago by Picasa ▴ 640
0
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1
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6.8k
views
Comment: Comment: gene set filter/selection for training ab initio annotation tools
2.8 years ago by Picasa ▴ 640
0
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1
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6.8k
views
Comment: Comment: gene set filter/selection for training ab initio annotation tools
2.8 years ago by Picasa ▴ 640
0
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1
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6.8k
views
Comment: Comment: gene set filter/selection for training ab initio annotation tools
2.8 years ago by Picasa ▴ 640
2
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7
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3.2k
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Using RNA seq for genome annotation
maker annotation
updated 2.9 years ago by 100k • written 6.9 years ago by ▴ 640
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0
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510
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Phased SNPs with single rad seq data ?
snp rad single
3.0 years ago by Picasa ▴ 640
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0
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655
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Alternative free software for recombination rate estimation ?
radseq joinmap stacks
3.0 years ago by Picasa ▴ 640
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0
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993
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Tools for .hic file visualization
juicer 3d-dna hic
3.2 years ago by Picasa ▴ 640
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1
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3.7k
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Comment: C: Using HiCanu assembler on PacBio Hifi reads
3.4 years ago by Picasa ▴ 640
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1
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814
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Assessing collapsed assembly ?
Assembly paralogue collapsing
updated 3.9 years ago by 6.4k • written 3.9 years ago by ▴ 640
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1
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9.7k
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Comment: C: Create de novo repeat library
3.9 years ago by Picasa ▴ 640
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1
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9.7k
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Comment: C: Create de novo repeat library
3.9 years ago by Picasa ▴ 640
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1
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13k
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Comment: C: RAxML outputs: which one I have to take ?
3.9 years ago by Picasa ▴ 640
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1
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3.1k
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Comment: C: ONT fast5 basecalling
3.9 years ago by Picasa ▴ 640
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0
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1.3k
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Comment: C: Best way for phylogenetic tree with missing data
3.9 years ago by Picasa ▴ 640
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0
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21k
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Comment: C: Polish PacBio assembly with latest PacBio tools : an affordable solution for eve
3.9 years ago by Picasa ▴ 640
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1
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1.3k
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Comment: C: Best way for phylogenetic tree with missing data
3.9 years ago by Picasa ▴ 640
2
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5
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1.3k
views
Best way for phylogenetic tree with missing data
phylogenetic tree
updated 3.9 years ago by ★ 27k • written 3.9 years ago by ▴ 640
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1
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1.4k
views
Comment: C: Transcript or cds for phylogenetic tree ?
4.0 years ago by Picasa ▴ 640
3
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3
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1.4k
views
Transcript or cds for phylogenetic tree ?
msa phylogenetic
updated 4.0 years ago by 15k • written 4.0 years ago by ▴ 640
1
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0
replies
612
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Subset long reads and optimal coverage
long reads Assembly
updated 4.0 years ago by 20 • written 4.0 years ago by ▴ 640
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1
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2.5k
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Comment: C: Workflow for structural variants from long read sequencing data
4.0 years ago by Picasa ▴ 640
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0
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1.0k
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Comment: C: Structural variation germline vs somatic ?
4.1 years ago by Picasa ▴ 640
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0
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1.0k
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Comment: C: Structural variation germline vs somatic ?
4.1 years ago by Picasa ▴ 640
3
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4
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1.0k
views
Structural variation germline vs somatic ?
structural variation germline somatic
updated 4.1 years ago by ▴ 10 • written 4.1 years ago by ▴ 640
0
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1
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864
views
Comment: C: How to get Gene ID from NCBI accession for non model species ?
4.1 years ago by Picasa ▴ 640
2
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3
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864
views
How to get Gene ID from NCBI accession for non model species ?
gene id ncbi accession
updated 4.1 years ago by 142k • written 4.1 years ago by ▴ 640
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1
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1.4k
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Comment: C: RepeatMasker overlap and interpretation
4.1 years ago by Picasa ▴ 640
6
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6
replies
1.3k
views
Where to upload protein coding gene annotation ?
maker protein
updated 4.1 years ago by 8.6k • written 4.1 years ago by ▴ 640
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3
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1.4k
views
RepeatMasker overlap and interpretation
repeat overlap
updated 4.1 years ago by 15k • written 4.1 years ago by ▴ 640
1
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3
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894
views
Contig longer than mitochondrial sequence. Explanation ?
mitochondrial contig
updated 4.2 years ago by ▴ 290 • written 4.2 years ago by ▴ 640
0
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1
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843
views
hi-c coverage for scaffolding
hi c scaffold Assembly
4.3 years ago by Picasa ▴ 640
0
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1
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6.8k
views
Comment: C: gene set filter/selection for training ab initio annotation tools
4.4 years ago by Picasa ▴ 640
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