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0
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2
replies
224
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why renaming Idents in Seurat object doesn't work?
Seurat RenameIdents R
updated 1 day ago by 43k • written 1 day ago by ★ 1.8k
0
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0
replies
224
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Answer: Answer: why renaming Idents in Seurat object doesn't work?
updated 1 day ago by 43k • written 1 day ago by ★ 1.8k
0
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0
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529
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Comment: Comment: Can index hopping lead to more reads in samples?
21 days ago by Assa Yeroslaviz ★ 1.8k
0
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0
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529
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Comment: Comment: Can index hopping lead to more reads in samples?
21 days ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
529
views
Comment: Comment: Can index hopping lead to more reads in samples?
21 days ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
529
views
Comment: Comment: Can index hopping lead to more reads in samples?
22 days ago by Assa Yeroslaviz ★ 1.8k
0
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0
replies
529
views
Comment: Comment: Can index hopping lead to more reads in samples?
22 days ago by Assa Yeroslaviz ★ 1.8k
1
vote
9
replies
529
views
Can index hopping lead to more reads in samples?
index-hopping NovoSeq illumina NGS Seqeucning
21 days ago by Assa Yeroslaviz ★ 1.8k
0
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0
replies
248
views
What does it means, when 2-direction perturbed pathways are identified in the gage enrichment analysis?
r pathway go-enrichment gage
24 days ago by Assa Yeroslaviz ★ 1.8k
0
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0
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274
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Comment: Comment: annotating single-cell clusters from gene lists
8 weeks ago by Assa Yeroslaviz ★ 1.8k
0
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2
replies
274
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annotating single-cell clusters from gene lists
annotation FindAllMarkers Seurat cell-type
updated 8 weeks ago by 43k • written 8 weeks ago by ★ 1.8k
0
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0
replies
135
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Correlating Chip-Seq and proteimics results
chip-seq correlations proteomics
12 weeks ago by Assa Yeroslaviz ★ 1.8k
0
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0
replies
186
views
Understanding Homer output for makeTagDirectory
chip-seq peaks homer makeTagDirectory
3 months ago by Assa Yeroslaviz ★ 1.8k
3
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4
replies
560
views
split sequences into their codons in a table
R fasta codon-table
3 months ago by Assa Yeroslaviz ★ 1.8k
1
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0
replies
560
views
Answer: Answer: split sequences into their codons in a table
3 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
153
views
cross-correlation peak at position 0 when calculating ChIp-Seq
cross-correlation peak chip-seq phantompeak ChIPseeker
3 months ago by Assa Yeroslaviz ★ 1.8k
1
vote
1
reply
276
views
Annotating peak using Chipseeker for non-model organism
GenomicFeatures chipseq chipseeker annoDB TxDb
updated 3 months ago by 13k • written 3 months ago by ★ 1.8k
1
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8
replies
1.5k
views
counts of cite-seq-count vs. cellrenager varies tremendously
citeseq-count cellranger cite-seq scRNA-seq
updated 4 months ago by 82k • written 9 months ago by ★ 1.8k
0
votes
0
replies
245
views
extracting Uniprot IDs for Kegg pathways
mapping uniprot R kegg clusterprofiler
4 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
581
views
Comment: Comment: Plotting gene Expression per pathway
6 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
581
views
Comment: Comment: Plotting gene Expression per pathway
6 months ago by Assa Yeroslaviz ★ 1.8k
1
vote
4
replies
581
views
Plotting gene Expression per pathway
GO-enrichment gene-expression R ggplot RNA-seq
6 months ago by Assa Yeroslaviz ★ 1.8k
3
votes
6
replies
848
views
summarize consecutive columns over a data frame
tidyverse r offtopic
updated 7 months ago by 43k • written 7 months ago by ★ 1.8k
0
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1
reply
848
views
Comment: Comment: summarize consecutive columns over a data frame
7 months ago by Assa Yeroslaviz ★ 1.8k
1
vote
3
replies
795
views
trajectory-like graph for a data frame
trajectory rna-seq tidyverse r velocity
updated 7 months ago by ★ 16k • written 7 months ago by ★ 1.8k
0
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1
reply
795
views
Comment: Comment: trajectory-like graph for a data frame
7 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
1.5k
views
Comment: Comment: counts of cite-seq-count vs. cellrenager varies tremendously
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
replies
1.5k
views
Comment: Comment: counts of cite-seq-count vs. cellrenager varies tremendously
9 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
588
views
Comment: Comment: WGS sequencing data based proteomics analysis
9 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
4
replies
588
views
WGS sequencing data based proteomics analysis
workflow UniProt proteomics WGS RNA-Seq
updated 9 months ago by ★ 1.1k • written 9 months ago by ★ 1.8k
1
vote
1
reply
6.5k
views
Comment: Comment: scRNA-seq CITE-seq-count bioinformatics
9 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
6.5k
views
Comment: Comment: scRNA-seq CITE-seq-count bioinformatics
9 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
6.5k
views
Answer: Answer: scRNA-seq CITE-seq-count bioinformatics
9 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
398
views
Comment: Comment: Checking significance in trend of time-series analysis for count data
9 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
2
replies
398
views
Checking significance in trend of time-series analysis for count data
glm RNA-Seq time-series
9 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
844
views
Comment: Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
10 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
844
views
Comment: Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
10 months ago by Assa Yeroslaviz ★ 1.8k
1
vote
5
replies
844
views
annotating single-cell cluster from Drosophila melanogaster using SingleR?
SingleR celldex cell-type-annotations scRNA
updated 10 months ago by ★ 1.6k • written 10 months ago by ★ 1.8k
2
votes
2
replies
884
views
6 follow
Why runing scDblFinder before and after removing low QC cells gives different results
singleCellExperiment scDblFinder SMART-Seq
updated 5 months ago by ▴ 200 • written 10 months ago by ★ 1.8k
0
votes
1
reply
1.2k
views
what is the difference between FindVariableFeatures and FindAllMarkers?
Seurat single-cell FindVariableFeatures FindAllMarkers RNA-Seq
updated 11 months ago by 13k • written 11 months ago by ★ 1.8k
5
votes
2
replies
627
views
ERCC normalization within DESeq2
normalization ERCC size.factors DESeq2
updated 12 months ago by 82k • written 12 months ago by ★ 1.8k
8
votes
5
replies
2.2k
views
DESeq2 model matrix not full rank
full-rank model-matrix deseq2
updated 12 months ago by 141k • written 2.8 years ago by ★ 1.8k
1
vote
1
reply
458
views
Can I add labels to (some) cells in a plotColData from scater?
single-cell-experiment plotColData scater
12 months ago by Assa Yeroslaviz ★ 1.8k
1
vote
0
replies
458
views
Answer: Answer: Can I add labels to (some) cells in a plotColData from scater?
12 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
381
views
How to normalise ChIP-Seq samples using deeptools
bamCoverage deepTools
updated 10 months ago by 43k • written 12 months ago by ★ 1.8k
0
votes
1
reply
3.1k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
13 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
3.1k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
13 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
3.1k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
13 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
2
replies
3.1k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
3.1k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by Assa Yeroslaviz ★ 1.8k
560 results • Page 1 of 12
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