Can I add labels to (some) cells in a plotColData from scater?

I would like to know if there is an option to add test label to the dots in a plotColData plot

plotColData(unfiltered, x="sum", y="subsets_Mito_percent", 
        colour_by="discard", other_fields = list("sample") )

I would like to show the sample names of the three samples/cells marked as TRUE (orange).

thanks

plotColData

single-cell-experiment plotcoldata scater

• 1,000 views • link

written 3.3 years ago by Assa Yeroslaviz

1 answer

Ok,

I have found that I can use also the geom_text() option of ggplots to do this.

• 0 views • link

written 3.3 years ago by Assa Yeroslaviz

More posts like this

Changing label geom_text in ggplot
written 1.7 years ago by Nona •

Good afternoon, Can anyone give me a hint on this: I would like to add in this plot not only the numbers of the Responder …
ggplot with ORR in y axis
written 1.8 years ago by Nona •

Good afternoon, I was wondering if anyone could guide me here: I would like to change my current plot in a way that I get …
mageck mle design matrix
written 1.8 years ago by Assa Yeroslaviz

I have two later time points I would like to compare with time point t0. I have wo t0 samples and each four t8 and …
remove the letter a from a biplot in ggplot
written 1.9 years ago by Assa Yeroslaviz

I'm trying to create a biplot in ggplot2 and manage to do it after a lot of trail and errors, But I can't get rid …
Differing p-value cutoffs of limma derived DEGs in volcanoplots
written 2.5 years ago by JirMan •

Hello everyone, I've been working on an RNAseq dataset, where I infected cells with virus and extracted RNA at different timepoints (3hpi, 6hpi, 9hpi, 24hpi) …
Add Chromosome Breaks and Labels to Continuous x-axis in R
written 4.5 years ago by selplat21 •

I have a paf file that have imported that has the following structure: Classes ‘pafr’ and 'data.frame': 44304 obs. of 18 variables: $ qname : …
Select specific values from a table
written 4.6 years ago by santiagoboccardo31 •

Hello I have been using ggplot2 to plot two sets of values from a data table called "TableFCvsFC". The two parameters that I am drawing …
ggplot2 scater plot with three grouping parameters
written 5.7 years ago by Assa Yeroslaviz

Hi, I'm analyzing an RNA-Seq data set using DESeq2. While doing exploratory data analysis, I would like to plot a PCA of my data. In …
Converting scRNA-Seq to Bulk-RNASeq
written 6.1 years ago by Assa Yeroslaviz

for the initial analysis of our data set we would like to convert our single-cell RNA-Seq into Bulk RNA-Seq by summarizing the #reads per gene …
Applying linear mixed model for RNA-Seq data
written 7.0 years ago by Assa Yeroslaviz

We have an RNA-Seq data set from mouse with three conditions in triplicates. For better understanding of the reaction, each of the animal was weighted …