Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
questions
0
votes
1
reply
2.3k
views
assigning cases and controls in plink
plink
updated 19 months ago by
Ram
43k • written 8.7 years ago by
nchuang
▴ 260
0
votes
0
replies
820
views
How to find GTex samples as accession list for download
genome
4.2 years ago by
nchuang
▴ 260
1
vote
0
replies
2.7k
views
bedtools genomecov with vcfs
sequencing
genome
updated 19 months ago by
Ram
43k • written 8.8 years ago by
nchuang
▴ 260
2
votes
0
replies
1.2k
views
how to merge genetic map of ChrX nonPAR with PAR1 and PAR2 for imputation?
beagle
imputation
plink
4.5 years ago by
nchuang
▴ 260
0
votes
0
replies
1.4k
views
How to decide method for imputing the missing genotype in a VCF
imputation
impute2
shapeit
beagle
4.5 years ago by
nchuang
▴ 260
0
votes
0
replies
1.0k
views
Possible to call variants from PacBio reads from a mixed sample?
pacbio
long reads
SNP
5.6 years ago by
nchuang
▴ 260
5
votes
10
replies
1.4k
views
CpG Methylation data from PacBio sequencing
sequencing
next-gen
pacbio
epigenetics
updated 5.6 years ago by
Antonio R. Franco
★ 5.1k • written 5.6 years ago by
nchuang
▴ 260
7
votes
5
replies
11k
views
Best way to convert VCF to PLINK file format and merge chromosomes?
plink
updated 20 months ago by
Ram
43k • written 8.7 years ago by
nchuang
▴ 260
1
vote
6
replies
4.3k
views
VIew reads sorted by name in IGV
bam
igv
samtools
updated 6.6 years ago by
d-cameron
★ 2.9k • written 6.7 years ago by
nchuang
▴ 260
0
votes
0
replies
1.2k
views
Is it possible to map prior to Pregap4 and Gap4?
staden
gap4
pregap4
6.7 years ago by
nchuang
▴ 260
0
votes
0
replies
1.3k
views
Assemblying Sanger traces and error threshold
sanger
abi
assembly
6.9 years ago by
nchuang
▴ 260
2
votes
3
replies
2.4k
views
Reliable alignment tool for similar sequences of similar length other than Mummer?
alignment
Mummer
updated 6.9 years ago by
novice
★ 1.1k • written 8.0 years ago by
nchuang
▴ 260
0
votes
1
reply
1.3k
views
Jalview and Windows 10 scaling not working
jalview
7.2 years ago by
nchuang
▴ 260
0
votes
2
replies
2.3k
views
Edit a single base in SeqRecord object in Biopython?
biopython
updated 7.4 years ago by
lakhujanivijay
5.8k • written 7.4 years ago by
nchuang
▴ 260
3
votes
8
replies
2.4k
views
Popen Blat has different behavior than same syntax in shell
python
blat
7.6 years ago by
nchuang
▴ 260
1
vote
3
replies
2.3k
views
Can NUCmer align a short sequence with a much longer sequence (local alignment)?
nucmer
mummer
local alignment
7.7 years ago by
nchuang
▴ 260
2
votes
4
replies
2.5k
views
Fast way to extract hg19 sequences with Biopython?
python
biopython
7.9 years ago by
nchuang
▴ 260
0
votes
0
replies
2.0k
views
How to force NUCmer to use exact match instead of unique match?
nucmer
mummer
alignment
7.9 years ago by
nchuang
▴ 260
6
votes
3
replies
2.5k
views
Substitution matrices to score variation between protein sequences?
alignment
blosum62
updated 8.0 years ago by
Steven Lakin
★ 1.8k • written 8.0 years ago by
nchuang
▴ 260
2
votes
4
replies
1.7k
views
How to visualize a set of sequence alignments that all have the same reference sequence?
alignment
updated 8.0 years ago by
bharata1803
▴ 560 • written 8.0 years ago by
nchuang
▴ 260
1
vote
4
replies
2.6k
views
Using a Multiple Seq Alignment tool for pairwise alignments possible?
multiple-sequence-alignment
msa
alignment
updated 12 months ago by
Ram
43k • written 8.0 years ago by
nchuang
▴ 260
5
votes
6
replies
3.8k
views
How to create empty Biopython MultipleSeqAlignment object?
biopython
updated 8.1 years ago by
gearoid
▴ 200 • written 8.1 years ago by
nchuang
▴ 260
2
votes
6
replies
2.0k
views
LRE3 Retrotransposon sequence
L1
LINE1
LRE3
retrotransposon
8.2 years ago by
nchuang
▴ 260
0
votes
2
replies
1.4k
views
Best way to look at nonsynonymous changes in a collection of sequences?
SNP
updated 21 months ago by
Ram
43k • written 8.4 years ago by
nchuang
▴ 260
22
votes
3
replies
11k
views
GWAS: when is it appropriate to add covariates?
genome
gwas
updated 19 months ago by
Ram
43k • written 8.7 years ago by
nchuang
▴ 260
11
votes
7
replies
4.8k
views
Hardy-Weinberg assumptions in variant calling
genome
SNP
updated 19 months ago by
Ram
43k • written 8.8 years ago by
nchuang
▴ 260
0
votes
0
replies
1.7k
views
What could account for these strange SNP discrepancies?
SNP
GATK
ANNOVAR
updated 18 months ago by
Ram
43k • written 8.8 years ago by
nchuang
▴ 260
3
votes
5
replies
4.2k
views
GATK jointgenotyping file locking and too many open files woes
GATK
updated 18 months ago by
Ram
43k • written 8.8 years ago by
nchuang
▴ 260
1
vote
0
replies
3.0k
views
General approach for genotype refinement after GATK processing?
sequencing
SNP
updated 16 months ago by
Ram
43k • written 8.9 years ago by
nchuang
▴ 260
29 results • Page
1 of 1
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6