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assigning cases and controls in plink
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5.4 years ago
nchuang • 200
@nchuang18948

Quick question.

I am trying to assign cases in my study for association test with "--make-pheno cases.list '*'" option but program keeps telling me there's less than two phenotypes. My command line is:

plink --bfile cases --make-pheno cases.list '*' --assoc

My cases.list file has two columns with FID and IID like this:

18175 1
19233 1
19302 1
19342 1
19367 1
19427 1
19477 1

I am using plink 1.9

plink • 1.0k views
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