How to find GTex samples as accession list for download
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4.2 years ago
nchuang ▴ 260

I am interested in downloading the current available 980 individual WGS data from the GTex project. I was able to get dbGAP authorized access and was looking through everything sorted by "blood" and "WGS" but it gives me 1276 combination of BAMs,CRAMs, and SRA files. I looked through the attributes table and if I sort by WGS, there are only 779, and there are no accession (ie SRR#######) listed for each sample. How does one figure out what the complete WGS list is and its respective accession numbers to download?

genome • 820 views
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