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Raju
Raju
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Joined:
4.4 years ago
Last seen:
2.6 years ago
Location:
India
Latest posts by user
0 votes
1 reply
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Comment: Comment: How to do clustering of SNPs according to linkage disequilibrium (r2) values?
written by Raju • Raju
0 votes
2 replies
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Comment: Comment: How to Extract SNPs from Linkage Disequilibrium data with r2 > 0.6 threshold?
written by Raju • Raju
0 votes
4 replies
1.7K views
How to Extract SNPs from Linkage Disequilibrium data with r2 > 0.6 threshold?
plink ld snp
updated by Quentin M • Quentin M • written by Raju • Raju
0 votes
0 replies
655 views
Get all SNPs that are high in Linkage Disequilibrium for set of SNPs
plink ld linkagedisequilibrium snps
written by Raju • Raju
0 votes
0 replies
0 views
Answer: Answer: [SOLVED] Get LD data for any two SNPs
written by Raju • Raju
0 votes
1 reply
881 views
How Can I Find SNP id from Chromosome Position?
plink python gwas chromosome
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Raju • Raju
0 votes
1 reply
757 views
I am trying to convert a tab file to bed what is the best command to do this?
plink gwas
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Raju • Raju
0 votes
1 reply
1.1K views
Data Description of Output of .glm.linear file
plink glm plink2 linear
updated by 4galaxy77 4galaxy77 • written by Raju • Raju
0 votes
0 replies
765 views
How to Calculate GWAS Summary Statistics?
plink gwas
written by Raju • Raju
0 votes
0 replies
654 views
How to Calcualte "Effect Size" and "Effect Allele" of each SNP
effectallele effectsize plink allele gwas
written by Raju • Raju
0 votes
1 reply
1.1K views
How to find Polygenic Risk Scores?
plink prsice2 polygenicriskscore vcf
updated by kanika.151 kanika.151 • written by Raju • Raju
0 votes
0 replies
0 views
Comment: Comment: How To Generate .Dat File For Imputation In Mach??
written by Raju • Raju
0 votes
0 replies
645 views
How to convert .bed/.bim/.fam file to .dat file to run --dosage command to get INFO
plink dosage
updated by Ram Ram • written by Raju • Raju
0 votes
1 reply
0 views
Comment: Comment: Which data files are required to find GWAS summary statistics?
written by Raju • Raju
0 votes
3 replies
1.1K views
Which data files are required to find GWAS summary statistics?
plink
updated by 4galaxy77 4galaxy77 • written by Raju • Raju
0 votes
1 reply
775 views
How to Extract Values for SNPs by each chromosome and position using --window
plink
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Raju • Raju
0 votes
0 replies
610 views
Extact SNPs ID's and their Values with IID, Additive and dominance components
plink
written by Raju • Raju
0 votes
1 reply
1.0K views
Additive and dominance components for .ped file
plink
updated by chrchang523 chrchang523 • written by Raju • Raju
0 votes
1 reply
892 views
How tp Extract SNPs values
plink
updated by zx8754 zx8754 • written by Raju • Raju
0 votes
0 replies
492 views
Command to extract SNPs rs17782313 from VCF file using bcftool
bcftools
written by Raju • Raju
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