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15 results • Page
1 of 1
Sort: Votes
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1
vote
3
replies
253
views
TaxID mapping file
annotation
blobtools
RNAseq
decontamination
transcriptomes
18 hours ago by
Lada
▴ 30
1
vote
0
replies
132
views
.lgen file has 3+ different alleles
PLINK
lgen
ped
updated 3 hours ago by
zx8754
11k • written 2 days ago by
Emilie
▴ 10
1
vote
2
replies
224
views
Downloading full alignments from Pfam
pfam
21 hours ago by
bef1
• 0
1
vote
2
replies
147
views
Can I merge Hi-C fastq files from different lanes?
GenomeAssembly
BWA-MEM2
Hi-C
10 minutes ago by
Winter
• 0
0
votes
0
replies
78
views
Gene ontology and homologs
geneontology
bioinformatics
gene
updated 13 hours ago by
GenoMax
142k • written 16 hours ago by
beshka194
• 0
0
votes
0
replies
78
views
Clarification on StringTie's `--merge` parameters
stringtie
stringtie-merge
23 hours ago by
DGTool
• 0
0
votes
0
replies
44
views
How to implement an IGV to streamlit app?
python
streamlit
igv
3 hours ago by
avigail.shnaider
• 0
0
votes
0
replies
22
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 2 hours ago by
Pierre Lindenbaum
161k • written 2 hours ago by
sarumonsus
• 0
0
votes
1
reply
124
views
Gene Specific coverage from WGS data
linux
WGS
Bioinformatics
SARS
CoV2
updated 1 hour ago by
1769mkc
★ 1.2k • written 6 days ago by
Adyasha
• 0
0
votes
1
reply
213
views
creating batch colum for batch correction
batch-correction
combat
1 hour ago by
Expert
▴ 10
0
votes
1
reply
21
views
error in R code
R
code
updated 21 minutes ago by
ATpoint
82k • written 28 minutes ago by
snajafy
• 0
0
votes
1
reply
164
views
Quetion regarding WGCNA
WGCNA
Network-construction
updated 4 hours ago by
andres.firrincieli
3.6k • written 2 days ago by
deepak180001
• 0
0
votes
0
replies
71
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
19 hours ago by
Christopher
• 0
0
votes
0
replies
70
views
Mitogenomes gap closure and making circular genome
gapclosure
Mitogenomes
validation
circulargenome
18 hours ago by
KHURRAM SHAHZAD
• 0
0
votes
1
reply
164
views
Help with DGEList function
DGEList
R
updated 13 hours ago by
marco.barr
▴ 90 • written 2 days ago by
Natali
• 0
15 results • Page
1 of 1
Recent Votes
Comment: Can I merge Hi-C fastq files from different lanes?
Answer: Interpretation of output from MiXCR TCR sequencing
Answer: Hide positions in alignment with 99% "–" characters to ignore single sequence in
Answer: Hide positions in alignment with 99% "–" characters to ignore single sequence in
Answer: Association study using SNP data
.lgen file has 3+ different alleles
Force PLINK2 to neglect chrX as the sex chromosome
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Recent Replies
Comment: Can I merge Hi-C fastq files from different lanes?
by
Winter
• 0
Awesome, thank you for the concise and straight-forward answer!
Comment: error in R code
by
ATpoint
82k
Look, before you keep posting these sorts of questions and might gross of users, please read and follow https://www.biostars.org/p/357878/ …
Comment: Gene Specific coverage from WGS data
by
1769mkc
★ 1.2k
"Also if is there any other quick way to find gene specific coverage" can you give some example so that its bit more clear what do you mean…
Answer: Tissue-specific DEG analysis with DEseq2
by
ATpoint
82k
I assume that all data are from the same experiment, without batch effects and can thus be quantitiatively compared: Many ways to do thi…
Comment: install.packages("imudata") - package ‘imudata’ is not available for this versio
by
snajafy
• 0
I am facing the same problem and I don't know how to solve the problem,....
Comment: install.packages("imudata")
by
zx8754
11k
[How should I deal with "package 'xxx' is not available (for R version x.y.z)" warning?](https://stackoverflow.com/q/25721884/680068)
Answer: install.packages("imudata")
by
ATpoint
82k
Welcome to this community. Please learn the most important lesson right away which is reading answers and learning from it. Users gave you …
Comment: install.packages("imudata")
by
marco.barr
▴ 90
You can install from github directly. Many R packages are not present in the CRAN repository or in Bioconductor( from Biocmanager). Also re…
Comment: install package
by
snajafy
• 0
Hi, Thanks for your answer, I do it, but I get this error: ERROR: compilation failed for package 'gmwm' removing 'C:/Users/najafi/AppData/…
Comment: Quetion regarding WGCNA
by
andres.firrincieli
3.6k
There is something wrong with your data but without any context I can't really answer to your question. I would like to see a PCA plot of …
Comment: error to run rnammer
by
antonio.spl
• 0
please could you tell me what was the solution, I am having the same problem, I only get empty files.
Comment: install package
by
snajafy
• 0
Hi, Thanks for your answer, I do it, but I get this error: ERROR: compilation failed for package 'gmwm' * removing 'C:/Users/najafi/AppData…
Answer: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
by
swbarnes2
14k
Any chance the numerical columns were imported as factors?
Comment: ERROR When Using Ensembl Plants Biomart Wget API
by
Dora
▴ 10
Thank you very much, that works perfectly :) ! Maybe someone needs to use a plant dataset as an example (instead of human dataset ) in the …
Comment: Truncated Bam Error
by
guanghao
• 0
I also have this problem, but it doesn't work even I remove the Xms32g. The result bam is still malformed.
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