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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 3 months ago by 2.8k • written 7.4 years ago by 100k
0
votes
0
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79
views
News: Course on Manual Genome Curation
Genome-Assembly Pretext-View Manual-Genome-Curation
updated 11 hours ago by 43k • written 18 hours ago by ★ 2.5k
0
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0
replies
85
views
News: New course: Manipulation of NGS Data for Genomic and Population Genetics Analyses
KeepLearning TScourses
2 days ago by Transmitting Science communication ▴ 70
0
votes
2
replies
424
views
News: FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq variant-calling RNA-seq illumina transcriptomics
3 days ago by David Langenberger 11k
0
votes
0
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128
views
News: Online course: An Introduction to Nanopore Direct RNA Sequencing
Nanopore RNAseq
5 days ago by carlopecoraro2 ★ 2.5k
2
votes
0
replies
155
views
News: course on Landscape Genomics at the EPFL in Lausanne (June 17-21)
LandscapeGenomics SNPs LocalAdaptation GIS
7 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
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126
views
News: Online course: Introduction to Deep Learning
Python Deep-Learning Convolutional-Neural-Network Machine-Learning
updated 8 days ago by 43k • written 8 days ago by ★ 2.5k
0
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0
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119
views
News: Online course. -Time series analysis and Forecasting in R
Time-Series Forecasting R Stastics
9 days ago by carlopecoraro2 ★ 2.5k
1
vote
2
replies
275
views
News: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering Spatial-transcriptomics
updated 10 days ago by • 0 • written 11 days ago by ▴ 10
0
votes
0
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120
views
News: Online course: Bioinformatic analysis of transposable elements
GenomeAssembly Transcriptomics TransposableElements ManualCuration
11 days ago by carlopecoraro2 ★ 2.5k
1
vote
2
replies
1.2k
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
12 days ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
146
views
News: Cellosaurus release 49 is available
cell biocuration line database news knowledgebase
14 days ago by Amos Bairoch ▴ 120
0
votes
0
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122
views
News: Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding Programming R
updated 14 days ago by 43k • written 15 days ago by ★ 2.5k
0
votes
0
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180
views
News: Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy Python NumPy
updated 16 days ago by 43k • written 16 days ago by • 0
0
votes
0
replies
143
views
News: Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis Statistics R
updated 16 days ago by 43k • written 16 days ago by ★ 2.5k
0
votes
0
replies
136
views
News: Online course: Genome Annotation
Genome-Assembly Genome-Annotation
18 days ago by carlopecoraro2 ★ 2.5k
3
votes
0
replies
240
views
News: Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy Generative-AI scRNA Machine-Learning
updated 20 days ago by 43k • written 21 days ago by ▴ 60
0
votes
0
replies
187
views
News: Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis Statistics R
updated 21 days ago by 43k • written 21 days ago by ★ 2.5k
0
votes
0
replies
146
views
News: hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models GLM R
updated 22 days ago by 43k • written 23 days ago by ★ 2.5k
3
votes
0
replies
154
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 23 days ago by 43k • written 23 days ago by ★ 2.5k
0
votes
0
replies
124
views
News: Online course: DNA methylation
Pacbio Nanopore DnaMethylation Evolution
25 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
163
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 25 days ago by 43k • written 26 days ago by ★ 2.5k
0
votes
0
replies
222
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 28 days ago by 43k • written 28 days ago by ★ 2.5k
0
votes
0
replies
204
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 28 days ago by 43k • written 28 days ago by ★ 2.5k
0
votes
0
replies
210
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 4 weeks ago by 43k • written 4 weeks ago by 11k
0
votes
0
replies
174
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 4 weeks ago by 43k • written 4 weeks ago by ▴ 380
0
votes
0
replies
202
views
News: Online course: Network Analysis in R
NetworkAnalyis R
4 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
211
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
1
vote
0
replies
153
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 5 weeks ago by 43k • written 5 weeks ago by ▴ 70
2
votes
0
replies
148
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 5 weeks ago by 43k • written 5 weeks ago by ▴ 70
2
votes
0
replies
148
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 5 weeks ago by 43k • written 5 weeks ago by ▴ 70
2
votes
0
replies
138
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
5 weeks ago by Transmitting Science communication ▴ 70
12
votes
2
replies
511
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
5 weeks ago by David Langenberger 11k
2
votes
0
replies
147
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
0
votes
0
replies
144
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
1
vote
0
replies
200
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
15 days ago by carlopecoraro2 ★ 2.5k
8
votes
2
replies
842
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
6 weeks ago by David Langenberger 11k
0
votes
0
replies
174
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 6 weeks ago by 43k • written 6 weeks ago by ★ 2.5k
0
votes
0
replies
169
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
6 weeks ago by carlopecoraro2 ★ 2.5k
3
votes
2
replies
693
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
6 weeks ago by Johannes W. Dietrich • 0
0
votes
0
replies
230
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 7 weeks ago by 43k • written 7 weeks ago by ★ 2.5k
0
votes
0
replies
193
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 7 weeks ago by 43k • written 7 weeks ago by ★ 2.5k
0
votes
0
replies
194
views
News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
7 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
183
views
News: Online course: Adaptation Genomics
StructuralVariants Selection AdaptationGenomics PopulationStructure
8 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
175
views
News: Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics Pangenomics
8 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
256
views
News: Online course on Genome Assembly and Annotation (1 seat left)
Galaxy GenomeAssembly GenomeAnnotation
9 weeks ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
200
views
News: NCBI's ClinVar now accepting somatic variation data
variation NCBI somatic-variants ClinVar
9 weeks ago by PeterC_NCBI ▴ 410
1
vote
1
reply
295
views
News: EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 9 weeks ago by • 0 • written 3 months ago by ▴ 10
1
vote
0
replies
226
views
News: Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow pipeline workshop
9 weeks ago by David Langenberger 11k
0
votes
0
replies
176
views
News: Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly Galaxy Genome-Annotation
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 2.5k
1,000 results • Page 1 of 20
Recent Votes
Answer: Generating consensus sequence from bam file
Answer: Short Read Data Genome Assembly
Comment: API kegg - IndexError: list index out of range
Comment: How does FindNeighbors() and FindClusters() related and work?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
lncRNA and ncPEPs identification
Answer: Identifying common DEGs among multiple datasets
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Comment: solution-Transcriptome.cpp:18:Transcriptome: exiting because of *INPUT FILE* err by GenoMax 142k
> INPUT FILE error: could not open input file /geneInfo.tab Based on the error it appears that the input file you are providing could not …
Answer: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Having duplicate gene symbols is pretty common. Why do you need to work with gene symbols? To compare them to external datasets? Or just fo…
Comment: Merge clusters in Seurat UMAP by kilcdincer ▴ 10
It did not help either. But I got the answer [here][1] Thank you! [1]: https://github.com/satijalab/seurat/issues/8902
Comment: How to generate table_annovar from VCF input? by Pierre Lindenbaum 161k
there is no `--allsample` option in the "usage" screen you're showing. I suspect you're using an old version ?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0
Thank you very much again. I have learned a lot of things.
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0
It's a microarryay experiment, not RNASeq
Comment: Sam file Header problem by Pierre Lindenbaum 161k
https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
Answer: Faster Needleman-Wunsch rapid global alignment of two sequences? by DGTool ▴ 20
I have also recently come across another global alignment algorithm that was recently released which could seem pretty interesting to test …
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences? by b.contreras.moreira ▴ 190
Not sure, you might ask in the repo, please share here the response if you find it
Comment: How to generate table_annovar from VCF input? by LucisTheFather • 0
Would you be more specific to your question? Do you mean how to debug this syntax error?
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
thank you
Comment: How to extract cells of different species after mapping with combined genome? by Tony • 0
I think this method should be applicable to all high-throughput single-cell RNA-seq platforms. Although the method of determining cell spec…
Comment: BiomartException: Query ERROR for existing dataset in BioMart by Nyksubuz ▴ 20
The dataset you want (taestivum_eg_gene) exists within the "plants_mart" schema, not the default schema. Your current code assumes the defa…
Comment: Add line under stat test by Nyksubuz ▴ 20
You could use [this][1] [1]: https://ggplot2.tidyverse.org/reference/geom_segment.html
Comment: API kegg - IndexError: list index out of range by Nyksubuz ▴ 20
It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…
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