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Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
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Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
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Thank you for the advice, i'll keep that in mind.
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The expression levels do not change but the way that you have parametrized the expression levels does change.
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