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125 results • Page
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Herald:
The Biostar Herald for Monday, May 06, 2024
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The Biostar Herald for Tuesday, April 23, 2024
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Pierre Lindenbaum
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Biostar
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cmdcolin
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Biostar
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Herald:
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The Biostar Herald for Monday, October 09, 2023
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500
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The Biostar Herald for Monday, August 28, 2023
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updated 8 months ago by
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▴ 760 • written 8 months ago by
Biostar
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10 months ago by
Biostar
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11 months ago by
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11 months ago by
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840
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The Biostar Herald for Thursday, May 11, 2023
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12 months ago by
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Herald:
The Biostar Herald for Monday, May 01, 2023
herald
updated 12 months ago by
cmdcolin
★ 3.8k • written 12 months ago by
Biostar
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The Biostar Herald for Monday, April 24, 2023
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752
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The Biostar Herald for Monday, April 10, 2023
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13 months ago by
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653
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The Biostar Herald for Monday, April 03, 2023
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13 months ago by
Biostar
2.7k
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643
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The Biostar Herald for Tuesday, March 28, 2023
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13 months ago by
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707
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The Biostar Herald for Monday, March 13, 2023
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Biostar
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669
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The Biostar Herald for Tuesday, February 28, 2023
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14 months ago by
Biostar
2.7k
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694
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The Biostar Herald for Monday, February 20, 2023
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14 months ago by
Biostar
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14 months ago by
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The Biostar Herald for Monday, February 06, 2023
herald
15 months ago by
Biostar
2.7k
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629
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Herald:
The Biostar Herald for Monday, January 30, 2023
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15 months ago by
Biostar
2.7k
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604
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The Biostar Herald for Monday, January 23, 2023
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15 months ago by
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125 results • Page
1 of 3
Recent Votes
Answer: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
A: Insert Size And Fragment Size ?
Answer: samtools 1.0 'index' : CSI index vs BAI index ?
Comment: Nextflow and self-made pipelines opinion
Comment: Nextflow and self-made pipelines opinion
What is Deepvariant default filtering values ?
Answer: Nextflow: how to get the process work dir, within the process
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Recent Awards •
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Popular Question
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strive
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LauferVA
4.2k
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ManuelDB
▴ 80
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nkls063408
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rj.rezwan
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Pierre Lindenbaum
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Recent Replies
Comment: input file for alternative splicing in rmats in linux
by
Ram
43k
I've done what I can to make your post more professional. Stick to outlining your problem, personal pleas do not really belong on a profess…
Comment: Contig assembly task, errors
by
rackbersingh
• 0
Hi Phillip, Thanks for providing an answer and clearing up some confusion, looking into what you said about older assemblers reverse comp…
Comment: How to analyze Infinium Mouse Methylation BeadChip array data?
by
Tawny
▴ 180
Did you get this figured out? I am having the same error in R.
Answer: JASPAR2024_getMatrixSet error
by
Raghad
• 0
Try this: ```r #Read the motifs library(JASPAR2024) library(TFBSTools) jaspar <- JASPAR2024() sq24 <- RSQLite::dbConnect(RSQLite::SQLite…
Answer: How to convert normalized BigWig file to count matrix?
by
ATpoint
82k
It's not possible. Gene counts are a region aggregate, bigwigs are a per-base readout and you cannot use normalized counts for mentioned to…
Comment: bcftools - reducing to "sites-only"?
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: bcftools - reducing to "sites-only"?
by
Matthew
• 0
Thank you Pierre! Not sure why I didn't notice that (I should have)
Comment: How to convert normalized BigWig file to count matrix?
by
Pierre Lindenbaum
161k
bigwig is chrom/start/end/value . what kind of matrix do you want ?
Comment: How to convert normalized BigWig file to count matrix?
by
feather-W
• 0
I want to use the matrix derived from bigwig files to perform different analysis by DESeq2 or edgeR.
Answer: Have you ever obtained user guide of ExomeCNV?
by
michael.s
▴ 10
I have uploaded the ExomeCNV (v1.4) user manual [here][1]. [1]: https://fastupload.io/hZbU
Answer: Server or aws cloud- which one is better for gatk pipeline
by
GenoMax
142k
I assume you mean "server" as in local hardware that you own/control since "cloud" is a just bunch of servers on internet that you rent (pa…
Answer: Server or aws cloud- which one is better for gatk pipeline
by
Michael
54k
I think that is more a matter of convenience and legality. It mostly depends on who pays for it and what you prefer. Both solutions should …
Comment: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
by
Pierre Lindenbaum
161k
> could you please explain what the collate does? http://www.htslib.org/doc/samtools-collate.html
Comment: ComBat_Seq stuck adjusting the data
by
Jaïr
• 0
Same keeps happening to me; but it is weird, I corrected the batch effect with the same exact function a few months ago and worked fine. I …
Comment: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
by
Lila M
★ 1.2k
Thank you for the feedback! I already used just the `samtools fastq -1 R1.fq.gz -2 R2.fq.gz -s Rx.fq.gz -0 R0.fq.gz`. Could you please exp…
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