Trimming reads before running Juicer
Hello folks! I have a very basic HiC related question. I am running Juicer on a dataset to get the .hic files, after running FastQC on my data I have realized it has ~10% of comulative adapter contamination at the end (150bp), is it necessary to trim it? Can Juicer run well with the un-trimmed data?
Thanks for the insight!
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