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Automatic Cluster Annotation to the subsets of immune cells

Dear Fellow,

I am wondering whether you all know any packages and reference annotation that can be used for automatic annotation down to the detailed subset of immune cells for single cell RNAseq. Have a good day!

Kind Regards,
synat

single-cell
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updated by Laker Chandler • Laker Chandler • written by synat.keam • synat.keam

1 answer 

CellTypist is the best for this. Give it a try.

https://www.celltypist.org/tutorials

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written by bk11 • bk11

This is great. However, it is only for human cells? How about mice? Thanks,

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written by Laker Chandler • Laker Chandler

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