Are the GRCh38.p12 and GRCh38.p13 using the same sequence?
I was wondering are the human annotation GRCh38.p12 and GRCh38.p13 using the same sequence and share the same genomic coordinates? Thanks in advance
• 1,656 views
•
link
updated
by
GenoMax
•
written
by
qwesxadzc9 •
•
written
by
qwesxadzc9 •
1 answer
Yes they are using the same sequence for main chromosomes. See: Understanding Used Assembly: Why aren't authors specific about patch version?
Patches are accessioned scaffold sequences that represent assembly updates. They add information to the assembly without disrupting the chromosome coordinates. Patch releases are cumulative.
Full revision history of patch accessions at the bottom of this page: https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000001405.29/
Log in to answer this question.
More posts like this
-
Can you swap reference genome releases ?
written by jonas.andersson •
-
Difference between ENSEMBL releases
written by gernophil •
-
How can I convert the transcript coordinate to a genomic coordinate?
written by qwesxadzc9 •
-
Detailed process for building snpEff database for NCBI RefSeq genomes?
written by fwuffy
-
Getting the db SNP VCF file for GRCh38.p13
written by nhaus •
-
Where can find we find dbSNP database for Human Genome GRCh38.p12
written by gprashant17
-
Which genome fasta file and GTF file to be used in the RNA-Seq analysis
written by wangdp123
-
Difference between GRCh38.91 and GRCh38.p12
written by caggtaagtat
-
Differences between genomic coordinates for CFTR in Ensembl GRCh37.p13 and NCBI GRCh37.p13
written by andrew.prayle •
-
Is there a NCBI eutils or something else to liftover or remap GRCh37.p13 coordinates to GRCh38 to b…
written by burcakotlu •
We keep seeing these patch vs freeze questions and I'd like to see u/48443/ pay this question forward.