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fwuffy
fwuffy
Reputation:
110
Joined:
11.3 years ago
Last seen:
6.0 years ago
Location:
Michigan, USA

Software developer working in NGS analytics. 

Latest posts by user
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Comment: C: how to make a .tbi file of .gtf.gz?
written by fwuffy fwuffy
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Comment: C: Detailed process for building snpEff database for NCBI RefSeq genomes?
written by fwuffy fwuffy
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2 replies
3.1K views
Detailed process for building snpEff database for NCBI RefSeq genomes?
snpeff genome database
written by fwuffy fwuffy
4 votes
2 replies
3.5K views
BWA Mem -M flag (mark split hits) effect on structural variation calling
bwa structural-variations delly
updated by trausch trausch • written by fwuffy fwuffy
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1 reply
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Comment: C: Looking for a database containing the least-conserved, most highly polymorphic S
written by fwuffy fwuffy
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4 replies
2.4K views
Looking for a database containing the least-conserved, most highly polymorphic SNPs (or regions) of the human genome (hg38)
conservation human snp
updated by colindaven colindaven • written by fwuffy fwuffy
1 vote
2 replies
6.8K views
Filtering VCF with vcf-tools using --maf=0.0001 filters out all homozygous calls ?!
vcf vcftools variants
updated by Ram Ram • written by fwuffy fwuffy
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1 reply
2.8K views
Can anyone tell me why BCFTools Call would call a homozygous variant at this position with 1/2 alt variant reads?
bcftools vcf variants
written by fwuffy fwuffy
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Comment: C: Picard MarkDuplicates fatal error
written by fwuffy fwuffy
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Comment: C: Picard MarkDuplicates fatal error
written by fwuffy fwuffy
1 vote
3 replies
3.9K views
Picard MarkDuplicates fatal error
picard markduplicates
updated by h.mon h.mon • written by fwuffy fwuffy
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Comment: C: VCF PL Values not making sense
written by fwuffy fwuffy
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Comment: A: VCF PL Values not making sense
written by fwuffy fwuffy
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3 replies
2.4K views
VCF PL Values not making sense
vcf
written by fwuffy fwuffy
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2 replies
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Answer: A: Number of Threads for BWA MEM
written by fwuffy fwuffy
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Comment: C: COSMIC hg38 free version
written by fwuffy fwuffy
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3 replies
4.5K views
COSMIC hg38 free version
cosmic vcf cancer
updated by Ram Ram • written by fwuffy fwuffy
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1 reply
3.1K views
SnpSift annotate reporting extra alleles not present in the input VCF
snpeff snp snpsift
updated by Ram Ram • written by fwuffy fwuffy
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3 replies
6.9K views
Convert VCF to BCF
vcf bcf vcftools
updated by Ram Ram • written by fwuffy fwuffy
1 vote
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Comment: C: Samtools mpileup quality scores all zero
written by fwuffy fwuffy
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