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burcakotlu
burcakotlu
Reputation:
40
Joined:
12.4 years ago
Last seen:
6.9 years ago
Location:
Turkey

about me

Latest posts by user
0 votes
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1.0K views
Why download GRch38 when my selected filter is only hg19 from ENCODE Data Experiment Matrix?
encode data experiment matrix
written by burcakotlu • burcakotlu
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Comment: C: Is there a file information dictionary for files downloaded from ENCODE through
written by burcakotlu • burcakotlu
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2 replies
1.6K views
Is there a file information dictionary for files downloaded from ENCODE through batch download?
encode
updated by Ram Ram • written by burcakotlu • burcakotlu
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1 reply
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Comment: C: What is the difference between tissues and cell lines in ENCODE>
written by burcakotlu • burcakotlu
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Comment: C: What is the difference between tissues and cell lines in ENCODE>
written by burcakotlu • burcakotlu
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5 replies
2.6K views
What is the difference between tissues and cell lines in ENCODE>
encode cell line
written by burcakotlu • burcakotlu
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0 replies
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Comment: C: Can there be overlaps in a bigWig or bigBed file?
written by burcakotlu • burcakotlu
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1 reply
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Comment: C: Can there be overlaps in a bigWig or bigBed file?
written by burcakotlu • burcakotlu
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5 replies
2.5K views
Can there be overlaps in a bigWig or bigBed file?
bigbed bigwig
updated by Alex Reynolds Alex Reynolds • written by burcakotlu • burcakotlu
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Answer: A: How to download *.FPKM-UQ.txt.gz files from TCGA GDC for some certain samples u
written by burcakotlu • burcakotlu
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1 reply
3.5K views
How to download *.FPKM-UQ.txt.gz files from TCGA GDC for some certain samples using python?
tcga gdc python sample
written by burcakotlu • burcakotlu
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0 replies
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Comment: C: Calculate pairwise LD for two given genomic loci (not rsIDs)?
written by burcakotlu • burcakotlu
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1 reply
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Comment: C: Calculate pairwise LD for two given genomic loci (not rsIDs)?
written by burcakotlu • burcakotlu
0 votes
1 reply
0 views
Comment: C: Calculate pairwise LD for two given genomic loci (not rsIDs)?
written by burcakotlu • burcakotlu
0 votes
6 replies
3.2K views
Calculate pairwise LD for two given genomic loci (not rsIDs)?
pairwise ld two given genomic loci
updated by Maxime Lamontagne Maxime Lamontagne • written by burcakotlu • burcakotlu
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0 replies
2.1K views
Getting DNA sequences by ncbi eutils for a specific assembly e.g.: hg19, hg38, GRCh37.p13 or GRCh38.p6?
ncbi eutils efetch dna sequences
written by burcakotlu • burcakotlu
0 votes
1 reply
2.1K views
Can we get gene information (such as gene HUGO symbol, molecular consequences, gene RefSeq Id) for a given rsID using ncbi eutils?
rsid gene symbol gene refseq id ncbi eutils
written by burcakotlu • burcakotlu
0 votes
1 reply
2.0K views
Getting assembly of an rsID using ncbi eutils?
assembly rsid ncbi eutils
written by burcakotlu • burcakotlu
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0 replies
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Comment: C: Having problem in getting rsIDs in a given gene interval using NCBI etuils!
written by burcakotlu • burcakotlu
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0 replies
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Comment: C: Having problem in getting rsIDs in a given gene interval using NCBI etuils!
written by burcakotlu • burcakotlu
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