Custom proteomes
I am searching for a FASTA file containing the proteome of all known human viruses. I would also be interested in a similar file containing the proteome of all known human pathogenic bacteria, and another one containing the proteome of all known human commensal bacteria. Any suggestion? Thank you!
proteome
fasta
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to create a merged human host viral RefSeq?
written by MatStat 16Hi all, I am trying to create **one** viral reference file with all viral RefSeq genomes known in a human host. Basically something like the …
-
Core proteome using local Blast
written by zarodkip 0Hello all, I am trying to establish a core proteome of A. baumannii, ie the proteins all of the strains have in common. I have …
-
How to carry out a bar-chart distribution of the conservation of orthological groups from a text fi…
written by BillyBionf 0I am a bioinformatics intern and I have a problem. I have 2 files,: - f1: one containing the list of viruses infecting several kinds …
-
Appending strings to fasta header from another file
written by Ming 11Hello there, I have a A.fasta file containing: >AAL09996.1 ATGTCTAGCAAGCCGTCGAATATGCTTGATGAAGTTACCCTGTATACTCACTACGGCCTATCCGTGGCGAAGAAGCTCGGTGCGAATATGGTCGATGCTTTCCGGTCGGCCTTTTCGGTCAATGATGACATTCGTCAGGTGTATTACCGCGACAAGGGCATCTCTCACGCCAAAGCCGGTCGTTATTCCGAGGCAGTGGTGATGCTCGAGCAGGTTTACGATGCCGATGCCTTCGACGTGGAAGTGGCGCTGCATTTGGGAATCGCCTACGTTAAGACCGGGGCCGTTGATCGCGGCACCGAGTTGCTTGAGCGCTCCATCGCCGATGCGCCTGACAACATCAAGGTCGCGACCGTCCTTGGCCTGACCTATGTGCAGGTGCAAAAATATGATTTGGCCGTGCCTCTACTGGTCAAGGTGGCGGAAGCCAATCCGGTGAATTTCAATGTCCGCTTCCGTCTCGGGGTGGCGCTGGATAATCTGGGCCGCTTTGACGAAGCCATCGACAGTTTCAAGATCGCTTTGGGGCTGCGTCCCAATGAAGGCAAGGTGCATCGCGCAATCGCGTACAGCTACGAGCAGATGGGCTCGCACGAAGAGGCTTTGCCGCATTTTAAGAAGGCCAATGAACTCGATGAACGTTCGGCCGTCTAA >AAR90856.1 ATGTCTAGCAAGCCGTCGGATATTCTTGACGAGGTCACTCTTTACGCTCACTACGGCCTTTCGGTGGCGAAGAAGCTCGGAATGAACATGGTCGATGCGTTCCGTGCGGCCTTTTCCGTCAACGACGACATCCGCCAGGTGTATTACCGCGACAAGGGCATCTCCCACGCCAAGGCCGGGCGCTATTCCCAGGCCGTCATGCTGCTGGAGCAGGTCTACGACGCCGATGCCTTCGATGTGGATGTGGCTCTGCACCTGGGAATCGCCTATGTGAAGACCGGCGCCGTCGATCGCGGCACCGAACTACTCGAACGTTCCTTGGCCGATGCGCCCGACAACGTGAAGGTGGCGACCGTTCTCGGCCTGACCTATGTGCAGGTGCAAAAGTACGATCTGGCCGTTCCGCTGCTGATCAAGGTGGCCGAGGCCAATCCCATCAATTTCAACGTCCGGTTCCGTCTGGGCGTGGCGCTGGACAACCTCGGCCGTTTCGACGAAGCCATCGACAGCTTCAAGATCGCGCTGGGCCTGCGTCCCAATGAAGGCAAGGTGCATCGCGCCATCGCCTTCAGCTATGAGCAGATGGGCCGGCACGAGGAAGCCTTGCCGCATTTCAAGAAGGCCAATGAACTTGACGAAGGGGCCTCGGTCTGA ... I also have another file, A.taxonomy: AAL09996.1 Bacteria;Proteobacteria;Alphaproteobacteria;Rhodospirillales;Rhodospirillaceae;Magnetospirillum;Magnetospirillum gryphiswaldense AAR90856.1 Bacteria;Proteobacteria;Alphaproteobacteria;Rhodospirillales;Rhodospirillaceae;Magnetospirillum;Magnetospirillum magnetotacticum …
-
get repeats for bacteria and viruses to generate simulated reads of repeats
written by dabid 0I am trying to simulate reads of repeat regions of bacteria and viruses. I though a database of repeats for bacteria and viruses would be …
-
Non pathogenic bacteria
written by priyankashrivastava4 1I want to know the name of databases or list of **non-pathogenic bacteria** for human? because all the available databases showing only pathogenic bacteria for …
-
How can I find reference composition of bacteria in helathy gut?
written by agata88 88Hi all, I am wondering if somebody know a database (files) that contains information about bacteria presented in healthy gut or skin etc.? Another thing: …
-
getting fasta sequences(proteome) from a file referencing another fasta file (tf)of the same organi…
written by kws15 4Hi everyone, Basically I have 2 large fasta sequences file, the first one is the proteome fasta sequences (all the protein sequences), the second one …
-
Splitting a large FASTA file into smaller FASTA files by Scaffolds
written by cameron.gudobba 2I am working with a large FASTA file that is subdivided into "Scaffolds", similar to this sample: ``` >Scaffold1 AAGTCCTGACTNNNNNNNNNNNNCGTACGTATCGATCG >Scaffold2 ACGTAGCTAATCGAGATCGATCNNNNNNNNNNNNNCGATTACGTACGATGTG >Scaffold3 ACGTATCGTACGTGTANNNNNNNNNNNNCGTACGATGCTACTCACGGATTACAAA ``` …
-
Blast entire proteomes
written by soileater 0How long would it take to blast an Entire Proteome to another one? I mean in a normal PC such as the latest mac mini …