chromosome location to gene name and aa change
Hi, I have just found an annotation metric, which contains data in these columns,
CHROM : chromosome
POS : position
REF : reference nucleotide
ALT : alternate nucleotide
hspred : "high sensitivity" prediction for exome analysis
pred : prediction for global performance
and I want to use these metrics for my list on snps in several genes, therefore I wonder how can I convert these chromosome coordinates to gene names and corresponding aminoacid changes in python preferably.
Thank You
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