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kristina.mahan
kristina.mahan
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180 (Trusted)
Joined:
8.0 years ago
Last seen:
4.1 years ago
Location:
United States
Latest posts by user
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Comment: Comment: Which companies/institutions allow you to use their servers for bioinformatics a
written by kristina.mahan 18
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Comment: Comment: Which companies/institutions allow you to use their servers for bioinformatics a
written by kristina.mahan 18
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6 replies
2.9K views
Which companies/institutions allow you to use their servers for bioinformatics analysis?
pacbio isoseq
updated by Ram 4.5K • | written by kristina.mahan 18
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1 reply
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Comment: Comment: Do you need a genome or can a transcriptome alone be used to identify biosynthet
written by kristina.mahan 18
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4 replies
1.9K views
Do you need a genome or can a transcriptome alone be used to identify biosynthetic pathways? Why sequence and assemble a genome?
de-novo-assembly biosynthetic-pathways plant transcriptomics
updated by Ram 4.5K • | written by kristina.mahan 18
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651 views
Can plantiSMASH be used with a transcriptome instead of a genome?
plantismash
updated by Ram 4.5K • | written by kristina.mahan 18
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3 replies
1.8K views
Genewiz gave me bam files instead of fasta files- can I convert bam to fasta to have a genome assembly?
bam samtools fasta
updated by Ram 4.5K • | written by kristina.mahan 18
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Comment: Comment: How do you add gene annotations from a Diamond Blastx tsv file to a csv file wit
written by kristina.mahan 18
1 vote
2 replies
1.8K views
Will this de novo transcriptome assembly be useful in looking at RNAseq differential expression?
de-novo-assembly
updated by Ram 4.5K • | written by kristina.mahan 18
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4 replies
2.9K views
How do you add gene annotations from a Diamond Blastx tsv file to a csv file with RNAseq differential expression data?
blastx rna-seq diamond
updated by Ram 4.5K • | written by kristina.mahan 18
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1 reply
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Comment: Comment: What Coverage allele-fraction threshold to use?
written by kristina.mahan 18
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1 reply
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Comment: Comment: What Coverage allele-fraction threshold to use?
written by kristina.mahan 18
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5 replies
2.5K views
What Coverage allele-fraction threshold to use?
allele-fraction snps
updated by Ram 4.5K • | written by kristina.mahan 18
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Answer: A: How to check for completeness of a mitochondrial or chloroplast genome?
written by kristina.mahan 18
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1 reply
2.5K views
Convert .sqn file to .gbk
organelle
updated by Ram 4.5K • | written by kristina.mahan 18
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Comment: C: How to obtain organelle genome
written by kristina.mahan 18
2 votes
2 replies
2.1K views
How to check for completeness of a mitochondrial or chloroplast genome?
genome-completeness organelles
updated by Ram 4.5K • | written by kristina.mahan 18
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0 replies
995 views
Need to fix .sqn genome annotation file prior to uploading to NCBI
sqn ncbi
updated by Ram 4.5K • | written by kristina.mahan 18
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Comment: C: Error with gff file while building snpeff database
written by kristina.mahan 18
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1 reply
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Comment: C: Error with gff file while building snpeff database
written by kristina.mahan 18
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