Liftover from hg19 to hg38 · Biostar

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Liftover from hg19 to hg38

Hello everybody, my name is Fabio and in the last few days I'm trying to get into bioinformatics.

More specifically I have to do a liftover, I've found on GEO a .bed file RNA seq that I would like to analyze, these data have been analyzed by using as a reference genome the hg19, but since the more recent hg38 exist I would like to see if something change. I've tried the UCSC web based tool, and I got a bed file, but I don't know if I ve done it correctly and also I don't know how to get the infos about what have changed.

Could you please recommend me some tutorials or guide line?

rnaseq format bed analysis liftover

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updated 3.5 years ago by Pierre Lindenbaum

• written 3.5 years ago by fabiopiscopo3 •

I don't know if I ve done it correctly

what makes you think this way ?

also I don't know how to get the infos about what have changed.

what info are you looking for ?

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written 3.5 years ago by Pierre Lindenbaum

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