Non-SNP polimorphism used in GWAS
Hi, do you know which non-SNP polymorphisms are used for GWAS? and do you have any articles about it?
polimorphisms
gwas
• 754 views
•
link
updated
by
4galaxy77
•
written
by
gosssheen •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
GWAS or QTL mapping in RIL population
written by 韩雨 •Hi Everyone, I have a RIL population and performed the phenotype investigation and NGS. Next, I want to map some genes which could regulate the …
-
PCA and logistic regression in GWAS
written by gosssheen •Hello, do you know why use the covar option with PCA factors in logistic regression? I can't understand the definition on the GWAS site of …
-
Delete individuals
written by gosssheen •Hi, I do GWAS analysis of dogs. Half of them are member in one olfactory group, another in second group but I have 4 dogs …
-
1001 Genome_SNP Matrix
written by Nikwan •Hi everyone, I am learning to do GWAS analysis in Arabidopsis. I used some accessions from the 1135 list (1001 genomes project)for a GWAS experiment. …
-
Dealing with Multiallelic in GWAS
written by Bio-gen-BHi, I'm quite new to GWAS, based on my understanding so far, I have some questions. - The model is often care only about the …
-
How to do a Haplotype based GWAS?
written by anikcropscience •Hello, this is my first post in this renowned group. Acutally, I am struggling with Haplotype based GWAS. I am doing GWAS on a plant …
-
are known polymorphisms in the primer sequence?
written by agata88Hi all! How can I check whether primer sequence include know polymorphisms? I've read about snp blast, but it's seems no longer available: https://www.ncbi.nlm.nih.gov/SNP/snpblastByChr.html Thanks …
-
Meta-analysis GWAS using statistical summaries in numerous studies
written by somayeh bakhshalizadeh •Hi, Can I analyze the GWAS meta-analysis using statistical summaries in numerous studies of about 60 articles with Plink software? Since ID SNP and so …
-
GWAS for ordinal data? Quantitative trait with lots of "zero" values....
written by fletchkatie •Hello, I have been using SNPTEST and also BOLT-LMM for some quantitative trait GWAS. Is there any GWAS software out there that can handle ordinal …
-
Why GWASs cannot speculate what kind of mutation the SNP would cause?
written by francois •I am trying to understand results from GWAS studies, and I have this question: Why can't GWAS studies speculate about what kind of consequence would …
Do you know what a non-SNP polymorphism is? If you do, it should be quite easy to google that + GWAS and get some ideas. can you explain what a non-SNP polymorphism is?