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Poly(A) analysis for nanopore reads

Hi everyone

I am interested in identifying the length of ployA tail for mrna-Seq data generated using nanopore platform.

Can you please let me know any tools or pipelines available for such analysis.

Thanks

ploya nanopore rna-seq mrna
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updated by colindaven colindaven • written by bioinfo_ga • bioinfo_ga

1 answer

Nanopolish might help:

https://nanopolish.readthedocs.io/en/latest/quickstart_polya.html

and also

https://github.com/adnaniazi/tailfindr

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written by colindaven colindaven

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