rna seq public databases

Question

[David_emir]

Hi. Please let me know the various publicly available databases for RNA seq data. I am actually looking at various available databases where I can download it and have meta-analysis.plz provide your valuable suggestions. Thanks for your help...it means a lot to me. Thanks again Dave

Answer 1

[Devon Ryan]

GEO, SRA, ENA, and DDBJ are the largest. Also, they share most of their datasets between each other.

[David_emir]

Thanks devon. Can we use any method to download these data?

[Devon Ryan]

Ftp or a web browser will always work. SRA has its own toolkit and both it and GEO have R packages.

[David_emir]

Thanks.can you please tell me the best methods in rna seq data management? Any material available?

[Devon Ryan]

There is no single best method. It will depend entirely on your needs.