Downloading RNA-Seq Raw Count data form ICGC

Hi All,

I am looking for downloading Raw-counts for PAAD from RNA-seq data From ICGC portal. Is there a way where we can download data in matrix form? Please let me know.

Thanks in Advance,

Regards,

DaV.

icgc raw_data rna-seq

• 2,826 views • link

written 7.6 years ago by David_emir

Looks like the answer here is still valid: Download ICGC gene expression data

• 0 views • link

written 7.6 years ago by GenoMax

0 answers

No answers yet.

More posts like this

H & E images ANALYSIS protocol
written 4.9 years ago by David_emir

Hi All, I am looking to analyze HnE images (hematoxylin and eosin) analysis. Can you please let me know if there are any Tutorials or …
ICGC Raw counts for RNA-Seq data
written 5.5 years ago by Zahra •

I want to download the raw counts of RNA-Seq data for PCAWG, but the ICGC just has the BAM format for RNA-Seq data and when …
Subsetting - Raw Counts from Seurat Object
written 6.3 years ago by David_emir

Hi All, I am working on Single-cell dataset, I wanted to extract raw counts of clusters (Say cluster num 4,6,8) and save it as a …
Count Matrix from Single cell RNA
written 6.4 years ago by David_emir

Hi All, We did Single Cell RNA data analysis from 25 diseased patients. The Vendor sent 25.MTX files to us. The files we received is …
Normal Samples From ICGC
written 7.5 years ago by David_emir

Hi All, I am looking for downloading Only Normal Samples (RNA-seq) Raw counts for Pancreatic Adenocarcinoma from International Cancer Genome Consortium (ICGC), But, I am …
Downloding only RNA-Seq Raw counts data from ICGC
written 7.6 years ago by David_emir

Hi, I wanted to download RNA-Seq raw counts data from ICGC with samples as columns and gene_symbol as row names. I tried using dplyr but …
Downloading triple negative breast cancer data from ICGC
written 8.0 years ago by graeme.thorn

I want to download RNA-seq and mutation data from the ICGC data portal at https://dcc.icgc.org/, but I'm only interested in triple negative breast cancer patients. …
TCGA - COAD read data gene expression analysis
written 8.7 years ago by David_emir

Hi All, I am planning to conduct differential gene exression analysis on TCGA-COAD/READ samples. Currently the samples are ported to GDC portal and its difficult …
TCGA normalized count data of 1000 samples for DGE
written 11.3 years ago by David_emir

Hi all, I have downloaded TCGA Breast cancer normalised data sets from 1000 samples form RNA seq V2 . The counts files have only two …
rna seq public databases
written 11.5 years ago by David_emir

Hi. Please let me know the various publicly available databases for RNA seq data. I am actually looking at various available databases where I can …