ICGC Raw counts for RNA-Seq data
I want to download the raw counts of RNA-Seq data for PCAWG, but the ICGC just has the BAM format for RNA-Seq data and when I search on the Expression Atlas, it just has the normalized counts of data (TPM, FPKM). Would you mind helping me how can I download the raw counts of RNA-Seq for PCAWG, please?
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Why don't I see people calculating FPKM from normalized read counts?
written by shelkmike
-
TPM RNA-seq data for differential expression analysis
written by Catalin-George •
-
Evaluate normalization method for scRNA-Seq Dataset
written by sp29 •
-
How can I download the PCAWG (ICGC/TCGA) raw counts data?
written by Sonia •
-
ICGC data download
written by Zahra •
-
retrieve TPM matrix from raw counts matrix or DESeq2 object dds
written by StartR •
-
Downloading RNA-Seq Raw Count data form ICGC
written by David_emir
-
Which package to use for RPKM/FPKM RNA-seq counts?
written by hafiz.talhamalik
-
RNA seq analysis
written by richa_makhijani •
-
CCLE normalized/processed RNA-seq data
written by BIOTIN •
You can run something like featureCounts on the bam to get counts.