This is a test version of Biostars. For the public version, visit https://www.biostars.org.
CCLE normalized/processed RNA-seq data

Dear all,

Is there any way to find/download CCLE normalized/processed RNA-seq in RPKM/FPKM/RSEM format? I know that this website (https://browser.cghub.ucsc.edu/) contains raw RNA-seq data.

Thanks in advances!

rna-seq cancer-cell-lines
• 8,318 views • link
updated by Ram Ram • written by BIOTIN • BIOTIN

This is actually a very good question! I would need the exact same thing but couldn't find it so far... let me know if you found a solution!

• 0 views • link
updated by Ram Ram • written by leshaker • leshaker

I'm interested in this as well. Please let me know if you found a solution. Thanks!

• 0 views • link
updated by Ram Ram • written by gspeyer • gspeyer

I am not able to download Raw Data and this website is taking to GDC portal. Is their a way to download CCLE Raw data from GDC portal as well?

• 1 views • link
updated by Ram Ram • written by always_learning always_learning

1 answer

I was able to access the bam files in GDC legacy archive. For the processed data, you can download it from Expression Atlas (EMBL-EBI)http://www.ebi.ac.uk/gxa/experiments/E-MTAB-2770

• 0 views • link
written by snow.wu • snow.wu

Log in to answer this question.

More posts like this