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Where to download processed time course RNA-seq data in human?

Hi,

Does anyone know where I can download the processed any time course RNA-seq data in human in terms of either raw counts, RPKM, CPM or RSEM?

Thank you,

rna-seq r
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updated by roy.granit roy.granit • written by Naresh D J • Naresh D J

2 answers

Raw counts : the fission dataset in R (I found it here)

library("fission")
data("fission")
ddsTC <- DESeqDataSet(fission, ~ strain + minute + strain:minute)
• 1 views • link
written by Carlo Yague Carlo Yague

Thanks Carlo Yauge. But I am looking for data in human and edited my question.

• 1 views • link
written by Naresh D J • Naresh D J

I didn't find time courses experiments in human but for future reference, I found some in rat, mouse, worm and fly : ReCount

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written by Carlo Yague Carlo Yague

You might want to checkout Repositive, one can easily search there for expression datasets.. and they have quite a selection of data sources

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written by roy.granit roy.granit

Does it provide a processed data? and it seems only the raw data.

• 1 views • link
written by Naresh D J • Naresh D J

hmm.. yes it's not clear if one can get the processed data. I would imagine that in some of these databases one can upload processed data.

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written by roy.granit roy.granit

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