Error The tag ING/CSQ not found in the header using bcftools
I would like to do some annotation in the 100K Genome project research environment. I haven't done annotation before.
Following their manual, I am using this command
bcftools +splitg-vep file_name.vcf -f '%CHROM:%POS-%REF/%ALT %LoF_filter \n -d
This is working perfectly with a VCF file they provide as an example but when I try to do this in one VCF file I got the error
The tag INFO/CSQ not found in the header
I have opened both files and the header contains the INFO tag
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show use the output of
for both files.
Pierre, as always thanks for your help. I found the issue. The VCF file generated had some defects. I used with other files and works ok