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jeni
jeni
Reputation:
90
Joined:
6.7 years ago
Last seen:
3.5 years ago
Location:
Spain
Latest posts by user
2 votes
3 replies
1.9K views
How to summarize the expression of a gene when having expression data from different transcripts of that gene
rnaseq expression
updated by i.sudbery i.sudbery • written by jeni • jeni
0 votes
0 replies
659 views
SNV occuring 2 fold more in forward than in reverse reads should be filtered?
variant-calling
updated by Ram Ram • written by jeni • jeni
0 votes
1 reply
0 views
Comment: Comment: MAGERI: a software tool for calling rare variants and detecting circulating tumo
written by jeni • jeni
0 votes
1 reply
1.1K views
How to statistically determine if a mutation has an impact on expression individually for one patient
rna-seq variant calling
written by jeni • jeni
0 votes
2 replies
1.1K views
Differential expression between just 2 samples: a normal and a tumour sample from the same patient
rna-seq
written by jeni • jeni
0 votes
1 reply
0 views
Comment: C: Correct number of detected variants by coverage
written by jeni • jeni
0 votes
3 replies
1.4K views
Correct number of detected variants by coverage
variant calling
written by jeni • jeni
0 votes
0 replies
0 views
Comment: C: Differencial expression analysis between groups determined by two variables
written by jeni • jeni
0 votes
3 replies
1.6K views
Differencial expression analysis between groups determined by two variables
expression microarray clustering
written by jeni • jeni
0 votes
1 reply
0 views
Comment: C: Does it make sense to transform expression data to zscore after performing RMA?
written by jeni • jeni
0 votes
1 reply
0 views
Comment: C: Does it make sense to transform expression data to zscore after performing RMA?
written by jeni • jeni
0 votes
6 replies
3.0K views
Does it make sense to transform expression data to zscore after performing RMA?
microarray expression
updated by kountaydwivedi • kountaydwivedi • written by jeni • jeni
0 votes
0 replies
1.1K views
Is it right to use a low amount of bumphunter permutations?
methylation microarray dmr
written by jeni • jeni
0 votes
1 reply
0 views
Comment: C: HOMER hg19 not found in config.txt
written by jeni • jeni
0 votes
0 replies
933 views
How to deal with SNPs and INDELs called in hypermutated regions?
variant calling
written by jeni • jeni
0 votes
0 replies
946 views
Where to find a list of hypermutated regions for hg19 assembly?
variant calling
written by jeni • jeni
0 votes
1 reply
2.1K views
How to know which genes are favouring or inactivating a pathway in a gene set enrichment analysis
enrichment analysis
updated by Papyrus Papyrus • written by jeni • jeni
0 votes
0 replies
1.4K views
Reduce GRanges by different lengths of overlapping, deppending on each compared intervals
granges
written by jeni • jeni
1 vote
3 replies
4.1K views
HOMER hg19 not found in config.txt
homer motif finding
updated by Sarah • Sarah • written by jeni • jeni
0 votes
0 replies
0 views
Comment: C: Best practice to find regulatory motifs in a set of sequences
written by jeni • jeni
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