I'd like to share an open-source tool I developed for integrating KEGG into AI-assisted bioinformatics workflows. In our lab we work with bacterial and fungal …

Hi there, I have managed to query the nr database with the BLAST REST API using code from their web_blast perl script, but i have …

I have a variant file (.vcf.gz), and I want to annotate this file using the Ensembl Rest API, particularly the Vep Rest API. I am …

Hi, I want to download the genome coordination of some transcripts and genes from ensembl database. Because these transcripts and genes are found only in …

I want to get a list of genes and interactions from the maps. http://www.kegg.jp/kegg-bin/highlight_pathway?scale=1.0&map=map04630&keyword=stat However, it looks like the rest api is not working (http://rest.kegg.jp/link/genes/hsa05223 …

Hi all, I would like to download the KGML files from all pathway of Arabidopsis Thaliana. It may be achieved using KEGG API (http://www.kegg.jp/kegg/rest/keggapi.html), but …

Is there any way to get the list of gene IDs by giving SNP IDs, via a web (REST) service? I need services like following: …

**What**: Ensembl Perl APIs: Exploring Ensembl programmatically **When**: 02-05 December 2014 **Where**: Bioinformatics Training Room, [Craik-Marshall Building](https://www.google.co.uk/maps?hl=en-GB&q=Craik-Marshall+Building,+Downing+Site,+Cambridge&source=calendar), Cambridge University At the end of this workshop, …

<p>I'm trying to do some data mining, and would like to programmatically retrieve all the enzyme numbers (EC numbers) for a given KEGG pathway. To …

<p>I was using KEGG API to download certain information related to enzymes and pathways. KEGG API expects certain inputs for some of the methods in …