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KGML pathway download

Hi all,

I would like to download the KGML files from all pathway of Arabidopsis Thaliana. It may be achieved using KEGG API (http://www.kegg.jp/kegg/rest/keggapi.html), but if it is I haven’t figured out how.

If anyone have an idea...

Thanks,

gene
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written by guillaume.rbt guillaume.rbt

Thank you very much Pierre, it works perfectly !

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written by guillaume.rbt guillaume.rbt

1 answer

something like:

$ curl -s  "http://rest.kegg.jp/list/organism" | grep "Arabidopsis thaliana"
T00041  ath Arabidopsis thaliana (thale cress)  Eukaryotes;Plants;Eudicots;Mustard family


$ curl "http://rest.kegg.jp/list/pathway/T00041" | cut -f 1 | while read A; do  curl -o "${A}.xml" "http://rest.kegg.jp/get/${A}/kgml" ; done
• 1 views • link
written by Pierre Lindenbaum Pierre Lindenbaum

please what language is this?

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written by efosa15 • efosa15

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