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How to get a list of genes and interactions from KEGG signaling pathways map?

I want to get a list of genes and interactions from the maps.

http://www.kegg.jp/kegg-bin/highlight_pathway?scale=1.0&map=map04630&keyword=stat

However, it looks like the rest api is not working (http://rest.kegg.jp/link/genes/hsa05223 )

Any else ways to do that?

genome
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updated by GenoMax GenoMax • written by zeyu.wang.ustc • zeyu.wang.ustc

1 answer

You can download the KGML/XML file for each pathway of interest from KEGG.

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written by theobroma22 theobroma22

how to do that? .........................................

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written by zeyu.wang.ustc • zeyu.wang.ustc

Well, you can do it manually from the KEGG website...it should be in the list to the right of the pathway. Alternatively, you can use the xml package in R if you require all pathways for your taxid of interest. Help is out there!

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written by theobroma22 theobroma22

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