Hi
We have exosome-seq (from plasma) results and in the chart I see panel RefSeq like WDR33
What is RefSeq here? Does it mean protein coding mRNAs?
Because based on my understanding by exosome-seq we can not catch too much mRNA.
This is what I am seeing
Actually most of data contains RefSeq
Thanks for any intuition
1 answer
The plot is very confusing, RefSeq is a database, it is not the same category as miRNA etc.
https://www.ncbi.nlm.nih.gov/refseq/
What the plot probably means is that those are transcripts annotated in RefSeq, but when it comes to RefSeq_antisense, it might mean that those are antisense transcripts of RefSeq annotated transcripts, or that are RefSeq annotated antisense transcripts, so not entirely obvious. Check the tool/docs for better suggestions.
you can do is search NCBI to figure out what terms might mean
https://www.ncbi.nlm.nih.gov/search/all/?term=%20WDR33
comes up with "WD repeat domain 33"
Log in to answer this question.
-
Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
written by mk
-
PCA plot analysis
written by Sanjukta •
-
Data quality on single nuclei transcriptomics
written by hema B •
-
STARsolo detected only one gene and Features.tsv file is empty
written by MYousry •
-
TCPA rppa Leve 3 data , how to differential protein analysis
written by jk •
-
cellranger for single nucleus RNA sequencing
written by dahun73 •
-
RNA transfer between human circulating cells and bacteria or contamination?
written by bart •
-
Which RNA type I should considered as long non-coding RNAs
written by zizigolu
-
High % Reads w/ Nextera Transposase Adapter
written by lintonf •
-
Defining the threshold for reads and features
written by zizigolu
