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TCPA rppa Leve 3 data , how to differential protein analysis

TCGA proteomics diffuse analysis

TcpA downloads the data of protein group RPPA leve 3, but many tumors have no control group (normal tissue), so grouping difference analysis cannot be carried out. At present, transcriptome RNA SEQ can be analyzed by TCGA and GTEX (normal tissue sequencing), and the proteome has not found the corresponding protein database. What method does TCGA proteome data need for difference analysis? We use R program,Thinks.

1 TCPA

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2 TCPA proteomics rppa level 3 data

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tcpa
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written by jk • jk

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see: TCGA - finding Normal and Tumor samples for matching protein and rna-seq samples

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written by jk • jk

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