How to calculate phred score of fastq files?

Hello All,

I want to calculate the Phred score for given fastq file. Is there any command line tools are available?

For example

Sample Name Phred score

sample1_R1.fq 36.24

sample1_R2.fq 37.35

Sample2_R1.fq 35.85

Sample2_R2.fq 35.10

please help

linux phred fastq

• 1,999 views • link

updated 4.9 years ago by GenoMax

• written 4.9 years ago by mathavanbioinfo

Check the explanation in this thread (yes there are two solutions) : FASTQ Phred33 average base quality score

• 0 views • link

written 4.9 years ago by GenoMax

0 answers

No answers yet.

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