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How to download all the genome fasta file for plants?

Hello, I want to download all genome fasta file of plants from NCBI for executing stand alone blast. Please share any command line tools are available.

Thank you Mathavan M

standalone blast
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updated by vkkodali_ncbi vkkodali_ncbi • written by mathavanbioinfo mathavanbioinfo

1 answer

NCBI Datasets is specifically designed for this use-case. You can either use the web interface to pick and choose the data you want or use the command line tool. There is an API too if you are building a application. The link above should have sufficient documentation to get you started.

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written by vkkodali_ncbi vkkodali_ncbi

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