How to download specific genomes

Question

[vm.higareda]

Hello

I want to download some genomes/assemblies of Enterobacter. NCBI retrieves me 9,548 genome assemblies of this bacteria, however, I only want to work with those isolated from plants or insects. Is there any option to filter genomes according to their sources? or another available tool to do that.

Thanks

Answer 1

[GenoMax]

See the two tools that can be used: A: To retrive all sequences and How to download all Pseudomonas aeruginosa Genomes from NCBI Genomes database?

There is also Kai Blin's NCBI genome downloader.

You will need to filter the genomes for this requirement isolated from plants or insects.