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Command for Downloading All Strains of Bacteria as a Single FASTA file from NCBI

I want to download all bacterial strains in a single fasta file from NCBI using command line, please suggest any.

Already tried wget ftp....

and ncbi-genome-download but always get "ncbi-get-download" is not a typo.

fasta
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written by Huzaifa • Huzaifa

1 answer

I want to download all bacterial strains in a single fasta file

For practical reasons you probably don't want to do that. It would be a ridiculously large file.

Use any of the tools mentioned here: How to download all Pseudomonas aeruginosa Genomes from NCBI Genomes database?

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written by GenoMax GenoMax

Thank You for the help.

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written by Huzaifa • Huzaifa

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