What is current the best available rat lung single cell RNA seq dataset for cell type annotation? any recommendations ?
I'm trying to perform cell type annotation on my scRNAseq data, I wonder whether is there any published rat lung single cell RNA seq dataset available for cell type annotation now?
Many thanks!
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Not sure if this is the same here, but these suggestions may apply, basically using published mouse references, then converting genes to rat orthologs (or vice versa):
https://support.bioconductor.org/p/9136905/
I guess there are notably fewer rat samples available than mouse as mouse is the more common model organism.
sra-explorer.info is a good tool to query NCBI for datasets.
Thanks, I'll go ahead and have a look, really appreciate the help!