Enhancer region

I have Chip seq data for du145 cell lines I want to specifically look at enrichment of motifs in enhancer region. How do I separate enhancer from promoter region?

chip-seq enhancer

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updated 3.8 years ago by xmLiu •

• written 5.3 years ago by rheab1230 •

1 answer

You can annotate the location of Chip-seq peaks in the genome use the R package ChIPseeker, or you can use bedtools to filter peaks overlapped with promoter.

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written 3.8 years ago by xmLiu •

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