Are the ENCODE raw fastq files and genotyping data available for each cell line?
I would like to check allele specific mapping of reads from the ENCODE ChIP-Seq data to a specific enhancer SNP in lines that are heterozygotes. Are the imputed genotypes available for ENCODE cell lines? Or alternatively raw fastq files from the ENCODE ChIP-Seq, as I could use ChIP-Seq fastqs to call variants.
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Khader Shameer
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Milos Pjanic •
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Milos Pjanic •
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