Where can I find mouse miRNA mm9 reference data in a format that will work with htseq-count?
I know mirbase but it does not work with the htseq-count.
Any suggestions?
Hi All, I am using the latest mice reference genome (**GRCm39**) for small RNAseq/miRNA-seq analysis. MiRBase database doesn't have any GFF/GTF file for the mouse …
hi, I am performing differential expression of pathogen fungi Aspergillus fumigatus miRNAs in response to human blood infection. first I trimmed adapters, then mapped trimmed …
<p>Hi all,</p> <p>I have DNA sequencing data where human tumors have mouse reads as per the experiment protocol(similar to PDX).</p> <p>I have calculated the read …
<p>Dear Biostars,</p> <p>I am using Galaxy "stichMAFBolcks" option against my genomic intervals (mm9). Surprisingly I am getting gaps in my reference sequence (mouse-mm9). But this …
<p>Dear All,</p> <p>I was wondering if someone knows where i can find an up-to-date reference transcriptome from a mouse (version mm9). It would be nice …