reference genome for mmu.gff3 (mirbasev22)

Hi,

I'm trying to do some miRNA analysis, I'm using the mmu.gff3 annotation file from mirBASE but I'm not sure where I can get the reference genome for the alignment that match to the mmu.gff3 file.

Thanks

mirna

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updated 5.1 years ago by Hyper_Odin 32 • | written 5.1 years ago by clizama 0

https://genome-euro.ucsc.edu/cgi-bin/hgGateway?redirect=manual&source=genome.ucsc.edu

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written 5.1 years ago by Hyper_Odin 32

yeap is mm10, however I'm not sure if should use the one from UCSC, ensembl or other source.

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written 5.1 years ago by clizama 0

https://mirbase.org/help/genome.shtml

Difference between UCSC and Ensembl genomes

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written 5.1 years ago by Hyper_Odin 32

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