reference genome for mmu.gff3 (mirbasev22)
Hi,
I'm trying to do some miRNA analysis, I'm using the mmu.gff3 annotation file from mirBASE but I'm not sure where I can get the reference genome for the alignment that match to the mmu.gff3 file.
Thanks
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clizama •
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https://genome-euro.ucsc.edu/cgi-bin/hgGateway?redirect=manual&source=genome.ucsc.edu
yeap is mm10, however I'm not sure if should use the one from UCSC, ensembl or other source.
https://mirbase.org/help/genome.shtml
Difference between UCSC and Ensembl genomes